Package: Biostrings
Title: Efficient manipulation of biological strings
Description: Memory efficient string containers, string matching
	algorithms, and other utilities, for fast manipulation of large
	biological sequences or sets of sequences.
Version: 2.48.0
Encoding: UTF-8
Author: H. Pagès, P. Aboyoun, R. Gentleman, and S. DebRoy
Maintainer: H. Pagès <hpages@fredhutch.org>
biocViews: SequenceMatching, Alignment, Sequencing, Genetics,
        DataImport, DataRepresentation, Infrastructure
Depends: R (>= 2.8.0), methods, BiocGenerics (>= 0.15.6), S4Vectors (>=
        0.17.25), IRanges (>= 2.13.24), XVector (>= 0.19.8)
Imports: graphics, methods, stats, utils
LinkingTo: S4Vectors, IRanges, XVector
Enhances: Rmpi
Suggests: BSgenome (>= 1.13.14), BSgenome.Celegans.UCSC.ce2 (>=
        1.3.11), BSgenome.Dmelanogaster.UCSC.dm3 (>= 1.3.11),
        BSgenome.Hsapiens.UCSC.hg18, drosophila2probe, hgu95av2probe,
        hgu133aprobe, GenomicFeatures (>= 1.3.14), hgu95av2cdf, affy
        (>= 1.41.3), affydata (>= 1.11.5), RUnit
License: Artistic-2.0
LazyLoad: yes
Collate: 00datacache.R utils.R IUPAC_CODE_MAP.R AMINO_ACID_CODE.R
        GENETIC_CODE.R XStringCodec-class.R seqtype.R XString-class.R
        XStringSet-class.R XStringSet-comparison.R XStringViews-class.R
        MaskedXString-class.R XStringSetList-class.R xscat.R
        XStringSet-io.R letter.R getSeq.R dinucleotideFrequencyTest.R
        chartr.R reverseComplement.R translate.R toComplex.R
        replaceAt.R replaceLetterAt.R injectHardMask.R padAndClip.R
        strsplit-methods.R misc.R SparseList-class.R MIndex-class.R
        lowlevel-matching.R match-utils.R matchPattern.R maskMotif.R
        matchLRPatterns.R trimLRPatterns.R matchProbePair.R matchPWM.R
        findPalindromes.R PDict-class.R matchPDict.R
        XStringPartialMatches-class.R XStringQuality-class.R
        QualityScaledXStringSet.R letterFrequency.R InDel-class.R
        AlignedXStringSet-class.R PairwiseAlignments-class.R
        PairwiseAlignmentsSingleSubject-class.R PairwiseAlignments-io.R
        align-utils.R pmatchPattern.R pairwiseAlignment.R stringDist.R
        needwunsQS.R MultipleAlignment.R matchprobes.R zzz.R
NeedsCompilation: yes
Packaged: 2018-05-01 00:58:03 UTC; biocbuild
Built: R 3.5.0; i386-w64-mingw32; 2018-05-01 11:36:42 UTC; windows
Archs: i386, x64
