batchqc_circosplot {BatchQC} | R Documentation

## Produce Circos plot

### Description

Produce Circos plot

### Usage

    batchqc_circosplot(dat, batch, AggMethod)

### Arguments

`dat` | Given data or simulated data from rnaseq_sim()
`batch` | Batch covariate
`AggMethod` | Aggregation Method

### Value

Generates Circular Dendrogram plot for the given data

### Examples

    nbatch <- 3
    ncond <- 2
    npercond <- 10
    data.matrix <- rnaseq_sim(ngenes=50, nbatch=nbatch, ncond=ncond, npercond=
        npercond, basemean=10000, ggstep=50, bbstep=2000, ccstep=800,
        basedisp=100, bdispstep=-10, swvar=1000, seed=1234)
    batch <- rep(1:nbatch, each=ncond*npercond)
    batchqc_circosplot(data.matrix, batch=batch, AggMethod='complete')

[Package BatchQC version 1.8.1 Index]