plotProfile {AneuFinder} | R Documentation

## Read count and CNV profile

### Description

Plot a profile with read counts and CNV-state from a `aneuHMM` object or `binned.data`.

### Usage

    plotProfile(model, both.strands = FALSE, plot.breakpoints = FALSE,
      file = NULL, normalize.counts = NULL)

### Arguments

`model` | A `aneuHMM` object or `binned.data`.
`both.strands` | If `TRUE`, strands will be plotted separately.
`plot.breakpoints` | Logical indicating whether breakpoints should be plotted.
`file` | A PDF file where the plot will be saved.
`normalize.counts` | An character giving the copy number state to which to normalize the counts, e.g. '1-somy', '2-somy' etc.

### Value

A `ggplot` object or `NULL` if a file was specified.

[Package AneuFinder version 1.8.0 Index]