inferGenotypes {AllelicImbalance} | R Documentation

## infererence of genotypes from ASEset count data

### Description

inference of genotypes

### Usage

    inferGenotypes(x, strand = "*", return.class = "matrix",
      return.allele.allowed = "bi", threshold.frequency = 0,
      threshold.count.sample = 1)

### Arguments

`x` | ASEset
`strand` | strand to infer from
`return.class` | 'matrix' or 'vector'
`return.allele.allowed` | vector with 'bi' 'tri' or 'quad'. 'uni' Always gets returned
`threshold.frequency` | least fraction to classify (see details)
`threshold.count.sample` | least amount of counts to try to infer allele

### Details

Oftern necessary information to link AI to SNPs outside coding region

### Author(s)

Jesper R. Gadin

### Examples

    data(ASEset)
    g <- inferGenotypes(ASEset)

[Package AllelicImbalance version 1.18.0 Index]