# Generated by roxygen2: do not edit by hand

S3method(as.phylo,ggtree)
S3method(as.phylo,phylo4)
S3method(as.phylo,treedata)
S3method(as.treedata,ggtree)
S3method(as.treedata,phylo)
S3method(as.treedata,phylo4)
S3method(as.treedata,phylo4d)
S3method(print,beastList)
export("%>%")
export(Nnode)
export(Nnode2)
export(Ntip)
export(as.phylo)
export(as.treedata)
export(drop.tip)
export(get.fields)
export(get.placements)
export(get.subs)
export(get.tipseq)
export(get.tree)
export(get.treetext)
export(getNodeNum)
export(getRoot)
export(groupClade)
export(groupOTU)
export(is.ggtree)
export(label_branch_paml)
export(mask)
export(merge_tree)
export(phyPML)
export(pmlToSeq)
export(raxml2nwk)
export(read.baseml)
export(read.beast)
export(read.codeml)
export(read.codeml_mlc)
export(read.hyphy)
export(read.jplace)
export(read.newick)
export(read.nhx)
export(read.paml_rst)
export(read.phylip)
export(read.phyloT)
export(read.r8s)
export(read.raxml)
export(read.tree)
export(rtree)
export(taxa_rename)
export(write.jplace)
export(write.tree)
exportClasses(beast)
exportClasses(codeml)
exportClasses(codeml_mlc)
exportClasses(hyphy)
exportClasses(jplace)
exportClasses(paml_rst)
exportClasses(phangorn)
exportClasses(phylip)
exportClasses(r8s)
exportClasses(treedata)
exportMethods(drop.tip)
exportMethods(get.fields)
exportMethods(get.placements)
exportMethods(get.subs)
exportMethods(get.tipseq)
exportMethods(get.tree)
exportMethods(get.treetext)
exportMethods(groupClade)
exportMethods(groupOTU)
exportMethods(show)
importFrom(ape,as.phylo)
importFrom(ape,extract.clade)
importFrom(ape,print.phylo)
importFrom(ape,read.nexus)
importFrom(ape,read.tree)
importFrom(ape,reorder.phylo)
importFrom(ape,rtree)
importFrom(ape,which.edge)
importFrom(ape,write.tree)
importFrom(ggplot2,fortify)
importFrom(jsonlite,fromJSON)
importFrom(magrittr,"%<>%")
importFrom(magrittr,"%>%")
importFrom(methods,"slot<-")
importFrom(methods,.hasSlot)
importFrom(methods,is)
importFrom(methods,missingArg)
importFrom(methods,new)
importFrom(methods,setClass)
importFrom(methods,setClassUnion)
importFrom(methods,setOldClass)
importFrom(methods,show)
importFrom(methods,slot)
importFrom(rvcheck,get_fun_from_pkg)
