DE                      Get DE
DEsymbols               Dictionary Gene2Symbol
GPL570                  Dictionary Gene2Probe
GSE9988                 Data frame containing expression values
Hs700                   Ordered Homo sapiens proteins of combined score
                        greater than or equal to 700
Hs800                   Ordered Homo sapiens proteins of combined score
                        greater than or equal to 800
Hs900                   Ordered Homo sapiens proteins of combined score
                        greater than or equal to 900
HsBPTerms               Dictionary Gene2GO
Mm700                   Ordered Mus musculus proteins of combined score
                        greater than or equal to 700
Mm800                   Ordered Mus musculus proteins of combined score
                        greater than or equal to 800
Mm900                   Ordered Mus musculus proteins of combined score
                        greater than or equal to 900
Rn700                   Ordered Rattus norvegicus proteins of combined
                        score greater than or equal to 700
Rn800                   Ordered Rattus norvegicus proteins of combined
                        score greater than or equal to 800
Rn900                   Ordered Rattus norvegicus proteins of combined
                        score greater than or equal to 900
Sc700                   Ordered Saccharomyces cerevisiae proteins of
                        combined score greater than or equal to 700
Sc800                   Ordered Saccharomyces cerevisiae proteins of
                        combined score greater than or equal to 800
Sc900                   Ordered Saccharomyces cerevisiae proteins of
                        combined score greater than or equal to 900
Transcriptogram-class   Class Transcriptogram
association             Association
clusterEnrichment       Term enrichment
clusterVisualization    Displays graphs of the differentially expressed
                        clusters
connectivityProperties
                        Calculates average graph properties as a
                        function of the node connectivity
differentiallyExpressed
                        Identify which genes are differentially
                        expressed
orderingProperties      Calculates graph properties projected on the
                        ordered proteins
radius<-                Radius
transcriptogramPreprocess
                        Creates an object of class Transcriptogram
transcriptogramStep1    Calculates the average of the expression values
                        related to the same protein
transcriptogramStep2    Calculates the average of the expression values
                        using a sliding window
