coverageGR {trackViewer}R Documentation

calculate coverage

Description

calculate coverage for GRanges, GAlignments or GAlignmentPairs

Usage

coverageGR(gr)

Arguments

gr

an object of RGanges, GAlignments or GAlignmentPairs

Value

an object of GRanges

Author(s)

Jianhong Ou

See Also

See Also as coverage, coverage-methods

Examples

    bed <- system.file("extdata", "fox2.bed", package="trackViewer",
                       mustWork=TRUE)
    fox2 <- importScore(bed)
    fox2@dat <- coverageGR(fox2@dat)
[Package trackViewer version 1.14.1 Index]