53350c7e553466831cabd24503f42c56 *CITATION
98166a48a2142dd3f1cbb956d791c871 *DESCRIPTION
ccd43c6f56ddd64e6b846ae592c69c52 *INDEX
3c4c394b077acb1b3915576fe54f2df0 *Meta/Rd.rds
a46f1debdc1f45796be2b2a0e6b3b378 *Meta/features.rds
6a41d3258daece77413b975dca1d62d7 *Meta/hsearch.rds
ffda2011d8fd83e97fa6771eaa14fb6a *Meta/links.rds
ecdbfdf61f9b43dfcac584a46fc776b2 *Meta/nsInfo.rds
a8413a6e50fafea535840796a7644340 *Meta/package.rds
06aa972aaae3ae5ef4323ec9a68c1624 *Meta/vignette.rds
560136214583c3f5f5d71fde970fb626 *NAMESPACE
d3404eca82b5dd31f0bac8c050b709e1 *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/systemPipeR
15edd32427b934e1b34078f333be7bb9 *R/systemPipeR.rdb
26b5d46af5d95fcc5bea16593c72f4a6 *R/systemPipeR.rdx
6e6201c97e0b49506698477c45a21d3f *doc/index.html
8d687bab610118a02618a4aa363160d4 *doc/systemPipeChIPseq.R
673bdba32a9dd5395a412a79a0740423 *doc/systemPipeChIPseq.Rnw
1e6ce12e7bc2918462b7fa881a7fd672 *doc/systemPipeChIPseq.pdf
89118663f38ea38141f0b3c7f443620b *doc/systemPipeR.R
3144c7eae84d97cd2db90cb3b141fcc0 *doc/systemPipeR.Rmd
16b92342461d7faa5d7421621204385e *doc/systemPipeR.html
a6d8702ba3e8c7ca8895fa79583f3417 *doc/systemPipeRIBOseq.R
24ca2ebe7700819a103c4006657ff146 *doc/systemPipeRIBOseq.Rnw
bacc8458ed66dde1ca2dbc251eb1c7bc *doc/systemPipeRIBOseq.pdf
2e44ad839747044bf13a1392c50a1be0 *doc/systemPipeRNAseq.R
cac6207a2d5bef07c0bdc40e712edc55 *doc/systemPipeRNAseq.Rnw
0c254c7565a78c78c4434e9c09bc0c4b *doc/systemPipeRNAseq.pdf
18018061db4cc3ed818608363cb002b8 *doc/systemPipeVARseq.R
ad5e495817f2d8fcf9bff5dddf44a37e *doc/systemPipeVARseq.Rnw
87fc3567f70879910b037c6746737bfe *doc/systemPipeVARseq.pdf
c08527c167f3a42f17564ea653dd9842 *extdata/Makefile
78dda8645d323b468922f7e483be4c9c *extdata/alignStats.xls
f11c8bb8f32228337b590ea3f00b3ea1 *extdata/annotate_peaks.param
2930ca439a416d3be1692445c4570ae2 *extdata/annotate_vars.param
3dd1314bc7adebaf6a5e5c6baf32422a *extdata/bowtiePE.param
5ab954737e604f7db27511ad75bcd8d9 *extdata/bowtieSE.param
aae4033870a0ef00a873be0b1b057f76 *extdata/bwa.param
784a3074752b394df008f0fb9e6ab9fc *extdata/countDFeByg.xls
c6911d9f8ebc54a6775821f1dc44286a *extdata/count_rangesets.param
b430bc8fb548a51d84917a8c587280e6 *extdata/custom_Fct.R
54e3d6c10356c74053ca1924b8576e21 *extdata/filter_gatk.param
7dcf24ed0132ec529de84fd04c14b202 *extdata/filter_sambcf.param
7cccff803c025141d49159ebe402aece *extdata/filter_vartools.param
78703d16e099b08f184a7b0cae1f08a0 *extdata/gatk.param
b394006139d9d91099117f3916fc4c31 *extdata/gatk_run.sh
ee61c831d0762f41d6182fb4e2d36c8a *extdata/gsnap.param
f95f0134cbad66a16c8307056a8ab4cc *extdata/macs2.param
dca9b2f81e39bad7b57af01f094bc56e *extdata/macs2_noinput.param
9cca89e6cd2ea6e3b8a4e3037d2891e3 *extdata/rpkmDFeByg.xls
3d30cad15d64aebc718192ef099fecd5 *extdata/rsubread.param
7004f0a88e037520b4a65ddd9a85999e *extdata/rundiff.param
205f33a7c2dfc67418ec0303621a141c *extdata/sambcf.param
939b5de645b9bb23b26564c42cc90b10 *extdata/sambcf_run.sh
6a293e6427d28d966002a9c20d65540a *extdata/slides/bibtex.bib
087e13be9dfae45df3468f9c0049b90a *extdata/slides/images/SystemPipeR_Workflow.png
d7b983bf69631cf7963e8f2ea6c987a0 *extdata/slides/logo.png
22a6080cb58587575f1b56f57ad4f571 *extdata/slides/systemPipeRslides.R
2b8f9796b104d578260f7988e50f0a1d *extdata/slides/systemPipeRslides.Rmd
a16f3f93be83e668f9b165be9824c131 *extdata/slides/systemPipeRslides.html
f538b097c9d1298b0ad2ee12081327d0 *extdata/targets.txt
c7084088a32f4beab1eede51d7bb8685 *extdata/targetsPE.txt
0286b968b47dda425f99c9efac4b094d *extdata/targetsPE_chip.txt
9e33954fb66979808b9d389cff6bdcf5 *extdata/targets_chip.txt
c67415d483577a02b783755824ba886f *extdata/tophat.param
1cd9d053915ae7212759294de6db92d9 *extdata/torque.tmpl
5b96dca6a17c61b43b5db71e20b54c30 *extdata/trim.param
a3f4e242449c101af6f2c9056696d3a1 *extdata/trimPE.param
f57aa9edff5506cc819e15368b8ab9ad *extdata/vartools.param
38357f2f736b49caed8f00effbe9e79e *extdata/vignette_archive/systemPipeR.R
ef5aaa34ad938f22360e6998e438ddf5 *extdata/vignette_archive/systemPipeR.Rnw
73b973ce72224e24ff0d9fd1408c96ab *extdata/vignette_archive/systemPipeR.pdf
849eabd50f0470c13cb7159861ff16f8 *help/AnIndex
65e9f778e6a7fdc3a1413dde71dfacb9 *help/aliases.rds
b164836ebbbc8a51d619960b7b5e0550 *help/paths.rds
0a7fa5690257306dc76041ae96fd402b *help/systemPipeR.rdb
d42060744eb72fca59c4b51c39f68bb8 *help/systemPipeR.rdx
9f6f49e64e9c265b4e09071a99d65dd5 *html/00Index.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
f02e326f800ee26f04df7961adbf7c0a *unitTests/SRR446027_1.fastq
f02e326f800ee26f04df7961adbf7c0a *unitTests/SRR446028_1.fastq
f02e326f800ee26f04df7961adbf7c0a *unitTests/SRR446029_1.fastq
f02e326f800ee26f04df7961adbf7c0a *unitTests/SRR446030_1.fastq
d3a1df6db3d820a1887c92b6385f113f *unitTests/targets.txt
48bb7620b0ea30ecde2cacf14e388025 *unitTests/test_classes.R
271e9a808cf0872c3a4012f003658498 *unitTests/tophat.param
