BASiCSEstimate          Estimate BASiCS simulation parameters
BASiCSParams            The BASiCSParams class
BASiCSSimulate          BASiCS simulation
Lun2Params              The Lun2Params class
LunParams               The LunParams class
MFAParams               The MFAParams class
Params                  The Params virtual class
PhenoParams             The PhenoParams class
SCDDParams              The SCDDParams class
SimpleParams            The SimpleParams class
SplatParams             The SplatParams class
ZINBParams              The ZINBParams class
addFeatureStats         Add feature statistics
addGeneLengths          Add gene lengths
bridge                  Brownian bridge
compareSCEs             Compare SingleCellExperiment objects
diffSCEs                Diff SingleCellExperiment objects
expandParams            Expand parameters
getLNormFactors         Get log-normal factors
getParam                Get a parameter
getParams               Get parameters
getPathOrder            Get path order
listSims                List simulations
logistic                Logistic function
lun2Estimate            Estimate Lun2 simulation parameters
lun2Simulate            Lun2 simulation
lunEstimate             Estimate Lun simulation parameters
lunSimulate             Lun simulation
makeCompPanel           Make comparison panel
makeDiffPanel           Make difference panel
makeOverallPanel        Make overall panel
mfaEstimate             Estimate mfa simulation parameters
mfaSimulate             MFA simulation
newParams               New Params
phenoEstimate           Estimate PhenoPath simulation parameters
phenoSimulate           PhenoPath simulation
rbindMatched            Bind rows (matched)
scDDEstimate            Estimate scDD simulation parameters
scDDSimulate            scDD simulation
setParam                Set a parameter
setParamUnchecked       Set a parameter UNCHECKED
setParams               Set parameters
setParamsUnchecked      Set parameters UNCHECKED
showPP                  Show pretty print
simpleEstimate          Estimate simple simulation parameters
simpleSimulate          Simple simulation
splatEstBCV             Estimate Splat Biological Coefficient of
                        Variation parameters
splatEstDropout         Estimate Splat dropout parameters
splatEstLib             Estimate Splat library size parameters
splatEstMean            Estimate Splat mean parameters
splatEstOutlier         Estimate Splat expression outlier parameters
splatEstimate           Estimate Splat simulation parameters
splatSimBCVMeans        Simulate BCV means
splatSimBatchCellMeans
                        Simulate batch means
splatSimBatchEffects    Simulate batch effects
splatSimCellMeans       Simulate cell means
splatSimDE              Simulate group differential expression
splatSimDropout         Simulate dropout
splatSimGeneMeans       Simulate gene means
splatSimLibSizes        Simulate library sizes
splatSimTrueCounts      Simulate true counts
splatSimulate           Splat simulation
splatter                splatter.
summariseDiff           Summarise diffSCESs
winsorize               Winsorize vector
zinbEstimate            Estimate ZINB-WaVE simulation parameters
zinbSimulate            ZINB-WaVE simulation
