biplot_color	biplot_color
biplot_interactive	biplot_interactive
cellcycle_genes	control_genes
CLR_FN	CLR_FN
control_genes	control_genes
cortical_markers	control_genes
DESEQ_FN	DESEQ_FN
estimate_ziber	estimate_ziber
factor_sample_filter	factor_sample_filter
fast_estimate_ziber	fast_estimate_ziber
FQT_FN	FQ_FN
FQ_FN	FQ_FN
get_batch	get_bio
get_batch,SconeExperiment-method	get_bio
get_bio	get_bio
get_bio,SconeExperiment-method	get_bio
get_design	get_design
get_design,SconeExperiment,character-method	get_design
get_design,SconeExperiment,numeric-method	get_design
get_negconeval	get_negconruv
get_negconeval,SconeExperiment-method	get_negconruv
get_negconruv	get_negconruv
get_negconruv,SconeExperiment-method	get_negconruv
get_normalized	get_normalized
get_normalized,SconeExperiment,character-method	get_normalized
get_normalized,SconeExperiment,numeric-method	get_normalized
get_params	get_params
get_params,SconeExperiment-method	get_params
get_poscon	get_negconruv
get_poscon,SconeExperiment-method	get_negconruv
get_qc	get_qc
get_qc,SconeExperiment-method	get_qc
get_scores	get_scores
get_scores,SconeExperiment-method	get_scores
get_score_ranks	get_scores
get_score_ranks,SconeExperiment-method	get_scores
housekeeping	control_genes
housekeeping_revised	control_genes
impute_expectation	impute_expectation
impute_null	impute_null
lm_adjust	lm_adjust
make_design	make_design
metric_sample_filter	metric_sample_filter
scone	scone
scone,SconeExperiment-method	scone
SconeExperiment	SconeExperiment-class
SconeExperiment,matrix-method	SconeExperiment-class
SconeExperiment,SummarizedExperiment-method	SconeExperiment-class
SconeExperiment-class	SconeExperiment-class
sconeReport	sconeReport
scone_easybake	scone_easybake
score_matrix	score_matrix
SCRAN_FN	SCRAN_FN
select_methods	select_methods
select_methods,SconeExperiment,character-method	select_methods
select_methods,SconeExperiment,numeric-method	select_methods
simple_FNR_params	simple_FNR_params
SUM_FN	SUM_FN
TMM_FN	TMM_FN
UQ_FN	UQ_FN
