Package: progeny
Title: Pathway RespOnsive GENes for activity inference from gene
        expression
Version: 1.0.0
Author: Michael Schubert <mschu.dev@gmail.com>
Maintainer: Michael Schubert <mschu.dev@gmail.com>
Description: This package provides a function to infer pathway activity
    from gene expression using PROGENy. It contains the linear model we
    inferred in the publication "Perturbation-response genes reveal signaling
    footprints in cancer gene expression".
URL: https://github.com/saezlab/progeny
BugReports: https://github.com/saezlab/progeny/issues
Depends: R (>= 3.4.0)
Imports: Biobase
biocViews: SystemsBiology, GeneExpression, FunctionalPrediction,
        GeneRegulation
License: Apache License (== 2.0) | file LICENSE
LazyData: true
Encoding: UTF-8
Suggests: airway, biomaRt, BiocFileCache, broom, DESeq2, dplyr, knitr,
        readr, readxl
VignetteBuilder: knitr
RoxygenNote: 6.0.1
NeedsCompilation: no
Packaged: 2017-10-31 02:23:08 UTC; biocbuild
Built: R 3.4.2; ; 2017-10-31 07:09:46 UTC; windows
