mzID-package	mzID-package
as.list.mzIDCollection	mzIDCollection-class
c,mzID-method	mzID-class
c,mzIDCollection-method	mzIDCollection-class
database,mzID-method	mzID-class
database,mzIDCollection-method	mzIDCollection-class
database,mzIDdatabase-method	mzIDdatabase-class
evidence	mzID-getters
evidence,mzID-method	mzID-class
evidence,mzIDCollection-method	mzIDCollection-class
evidence,mzIDevidence-method	mzIDevidence-class
files	mzID-getters
files,mzID-method	mzID-class
files,mzIDCollection-method	mzIDCollection-class
files,mzIDparameters-method	mzIDparameters-class
flatten	flatten
flatten,mzID-method	flatten
flatten,mzIDCollection-method	flatten
flatten,mzIDpeptides-method	flatten
flatten,mzIDpsm-method	flatten
id	mzID-getters
id,mzID-method	mzID-class
id,mzIDCollection-method	mzIDCollection-class
id,mzIDpsm-method	mzIDpsm-class
idScanMap	mzID-getters
idScanMap,mzID-method	mzID-class
idScanMap,mzIDCollection-method	mzIDCollection-class
idScanMap,mzIDpsm-method	mzIDpsm-class
increment	increment
increment,mzIDCollection-method	increment
keyFor	keyFor
keyFor,mzIDCollection,character-method	keyFor
length,mzID-method	mzID-class
length,mzIDCollection-method	mzIDCollection-class
length,mzIDdatabase-method	mzIDdatabase-class
length,mzIDevidence-method	mzIDevidence-class
length,mzIDparameters-method	mzIDparameters-class
length,mzIDpeptides-method	mzIDpeptides-class
length,mzIDpsm-method	mzIDpsm-class
modifications,mzID-method	mzID-class
modifications,mzIDCollection-method	mzIDCollection-class
modifications,mzIDpeptides-method	mzIDpeptides-class
mzID	mzID
mzID-class	mzID-class
mzID-getters	mzID-getters
mzIDCollection	mzIDCollection
mzIDCollection-class	mzIDCollection-class
mzIDdatabase	mzIDdatabase
mzIDdatabase-class	mzIDdatabase-class
mzIDevidence	mzIDevidence
mzIDevidence-class	mzIDevidence-class
mzIDparameters	mzIDparameters
mzIDparameters-class	mzIDparameters-class
mzIDpeptides	mzIDpeptides
mzIDpeptides-class	mzIDpeptides-class
mzIDpsm	mzIDpsm
mzIDpsm-class	mzIDpsm-class
names,mzIDCollection-method	mzIDCollection-class
names<-,mzIDCollection,character-method	mzIDCollection-class
parameters	mzID-getters
parameters,mzID-method	mzID-class
parameters,mzIDCollection-method	mzIDCollection-class
parameters,mzIDparameters-method	mzIDparameters-class
peptides,mzID-method	mzID-class
peptides,mzIDCollection-method	mzIDCollection-class
peptides,mzIDpeptides-method	mzIDpeptides-class
removeDecoy	removeDecoy
removeDecoy,mzID-method	mzID-class
removeDecoy,mzIDCollection-method	mzIDCollection-class
scans,mzID-method	mzID-class
scans,mzIDCollection-method	mzIDCollection-class
scans,mzIDpsm-method	mzIDpsm-class
show,mzID-method	mzID-class
show,mzIDCollection-method	mzIDCollection-class
show,mzIDdatabase-method	mzIDdatabase-class
show,mzIDevidence-method	mzIDevidence-class
show,mzIDparameters-method	mzIDparameters-class
show,mzIDpeptides-method	mzIDpeptides-class
show,mzIDpsm-method	mzIDpsm-class
software	mzID-getters
software,mzID-method	mzID-class
software,mzIDCollection-method	mzIDCollection-class
software,mzIDparameters-method	mzIDparameters-class
[,mzIDCollection,character,missing,missing-method	mzIDCollection-class
[,mzIDCollection,logical,missing,missing-method	mzIDCollection-class
[,mzIDCollection,numeric,missing,missing-method	mzIDCollection-class
[[,mzIDCollection,character,missing-method	mzIDCollection-class
[[,mzIDCollection,numeric,missing-method	mzIDCollection-class
