# Generated by roxygen2: do not edit by hand

export(darker)
export(filterParams)
export(getChromosomeNamesBoundingBox)
export(getCytobandColors)
export(getCytobands)
export(getDefaultPlotParams)
export(getMainTitleBoundingBox)
export(getVariantsColors)
export(kpAbline)
export(kpAddBaseNumbers)
export(kpAddChromosomeNames)
export(kpAddCytobandLabels)
export(kpAddCytobands)
export(kpAddCytobandsAsLine)
export(kpAddLabels)
export(kpAddMainTitle)
export(kpArrows)
export(kpAxis)
export(kpBars)
export(kpDataBackground)
export(kpHeatmap)
export(kpLines)
export(kpPlotBAMDensity)
export(kpPlotCoverage)
export(kpPlotDensity)
export(kpPlotLinks)
export(kpPlotLoess)
export(kpPlotMarkers)
export(kpPlotRainfall)
export(kpPlotRegions)
export(kpPlotRibbon)
export(kpPoints)
export(kpPolygon)
export(kpRect)
export(kpSegments)
export(kpText)
export(lighter)
export(plotDefaultPlotParams)
export(plotKaryotype)
export(prepareParameters2)
export(prepareParameters4)
import(GenomicRanges)
import(methods)
import(regioneR)
importFrom(GenomeInfoDb,keepSeqlevels)
importFrom(GenomeInfoDb,seqlevels)
importFrom(IRanges,IRanges)
importFrom(IRanges,overlapsAny)
importFrom(Rsamtools,BamFile)
importFrom(Rsamtools,ScanBamParam)
importFrom(Rsamtools,countBam)
importFrom(Rsamtools,idxstatsBam)
importFrom(S4Vectors,runLength)
importFrom(S4Vectors,runValue)
importFrom(bezier,bezier)
importFrom(biovizBase,getBioColor)
importFrom(biovizBase,getIdeogram)
importFrom(digest,digest)
importFrom(graphics,strwidth)
importFrom(memoise,memoise)
importFrom(rtracklayer,ucscTableQuery)
importFrom(stats,loess)
importFrom(stats,predict)
importFrom(stats,qt)
importFrom(stats,setNames)
