genoset-package	genoset-package
.do_rledf_range_summary	do_rledf_range_summary
.do_rledf_views	do_rledf_views
as.matrix,RleDataFrame-method	RleDataFrame-class
baf2mbaf	baf2mbaf
boundingIndices	boundingIndices
boundingIndicesByChr	boundingIndicesByChr
bounds2Rle	bounds2Rle
calcGC	calcGC
calcGC2	calcGC2
chr	chr-methods
chr,GenomicRanges-method	chr-methods
chr,GenoSet-method	chr-methods
chrIndices	chrIndices-methods
chrIndices,GenoSetOrGenomicRanges-method	chrIndices-methods
chrInfo	chrInfo-methods
chrInfo,GenoSetOrGenomicRanges-method	chrInfo-methods
chrNames	chrNames-methods
chrNames,GenomicRanges-method	chrNames-methods
chrNames,GenoSet-method	chrNames-methods
chrNames<-	chrNames-methods
chrNames<-,GenomicRanges-method	chrNames-methods
chrNames<-,GenoSet-method	chrNames-methods
chrOrder	chrOrder
chrPartitioning	chrPartitioning
cn2lr	cn2lr-methods
cn2lr,DataFrame-method	cn2lr-methods
cn2lr,matrix-method	cn2lr-methods
cn2lr,numeric-method	cn2lr-methods
coerce,RleDataFrame,matrix-method	RleDataFrame-class
colMeans,DataFrame-method	RleDataFrame-class
colMeans,RleDataFrame-method	RleDataFrame-class
colSums,RleDataFrame-method	RleDataFrame-class
fixSegNAs	fixSegNAs
gcCorrect	gcCorrect
genome	genome
genomeAxis	genomeAxis
genoPlot	genoPlot-methods
genoPlot,GenoSetOrGenomicRanges,ANY-method	genoPlot-methods
genoPlot,numeric,numeric-method	genoPlot-methods
genoPlot,numeric,Rle-method	genoPlot-methods
genoPos	genoPos-methods
genoPos,GenoSetOrGenomicRanges-method	genoPos-methods
GenoSet	genoset-methods
genoset	genoset-package
GenoSet-class	GenoSet-class
genoset-datasets	genoset-dataset
genoset.ds	genoset-dataset
GenoSetOrGenomicRanges-class	GenoSet-class
isGenomeOrder	isGenomeOrder
lengths,GenoSet-method	genoset-methods
lr2cn	lr2cn
modeCenter	modeCenter
nrow,GenomicRanges-method	genomicranges-methods
numCallable	numCallable
pos,GenoSetOrGenomicRanges-method	pos-methods
rangeColMeans	RleDataFrame-views
rangeMaxs	RleDataFrame-views
rangeMaxs,RleDataFrame-method	RleDataFrame-views
rangeMeans	RleDataFrame-views
rangeMeans,matrix-method	RleDataFrame-views
rangeMeans,numeric-method	RleDataFrame-views
rangeMeans,RleDataFrame-method	RleDataFrame-views
rangeMins	RleDataFrame-views
rangeMins,RleDataFrame-method	RleDataFrame-views
rangeSampleMeans	rangeSampleMeans
rangeSegMeanLength	rangeSegMeanLength-methods
rangeSegMeanLength,GRanges,data.frame-method	rangeSegMeanLength-methods
rangeSegMeanLength,GRanges,list-method	rangeSegMeanLength-methods
rangeSums	RleDataFrame-views
rangeSums,RleDataFrame-method	RleDataFrame-views
rangeWhichMaxs	RleDataFrame-views
rangeWhichMaxs,RleDataFrame-method	RleDataFrame-views
rangeWhichMins	RleDataFrame-views
rangeWhichMins,RleDataFrame-method	RleDataFrame-views
rbindDataframe	rbindDataframe
readGenoSet	readGenoSet
RleDataFrame	RleDataFrame-class
RleDataFrame-class	RleDataFrame-class
RleDataFrame-views	RleDataFrame-views
rowMeans,RleDataFrame-method	RleDataFrame-class
rowSums,RleDataFrame-method	RleDataFrame-class
runCBS	runCBS
segPairTable	segPairTable-methods
segPairTable,DataFrame,DataFrame-method	segPairTable-methods
segPairTable,Rle,Rle-method	segPairTable-methods
segs2Granges	segs2Granges
segs2Rle	segs2Rle
segs2RleDataFrame	segs2RleDataFrame
segTable	segTable-methods
segTable,DataFrame-method	segTable-methods
segTable,Rle-method	segTable-methods
show,RleDataFrame-method	RleDataFrame-class
toGenomeOrder	toGenomeOrder
[,GenoSet,ANY-method	genoset-subset
[<-,GenoSet,ANY,ANY,ANY-method	genoset-subset
