BOG                     calculate disease similarity by BOG
CosineDFV               calculate disease similarity by using feature
                        vectors
FunSim                  calculate disease similarity by FunSim
HumanNet_sample         HumanNet_sample
HypergeometricTest      Hypergeometric test and multiple testing
ICod                    calculate disease similarity by ICod
InformationContent      calculating information content
LLSn2List               convert data.frame of HumanNet log-likelihood
                        Score to list
Normalize               normalize data
PPI_HPRD                PPI_HPRD
PSB                     calculate disease similarity by PSB
Separation              calculating network-based separation of disease
                        pairs
Separation2Similarity   a method which convert separation to similarity
Sun_annotation          Sun's annotation measure of disease similarity
                        calculating
Sun_function            Sun's function measure of disease similarity
                        calculating
Sun_topology            Sun's topology measure of disease similarity
                        calculating
d2g_fundo_entrezid      d2g_fundo_entrezid
d2g_fundo_symbol        d2g_fundo_symbol
d2g_separation          d2g_separation
d2go_sample             d2go_sample
d2s_hsdn                d2s_hsdn
d2s_hsdn_sample         d2s_hsdn_sample
dSimer-package          Integration of Disease Similarity Methods
get_GOterm2GeneAssos    get GO-gene associations
go2g_sample             go2g_sample
graphlet_sig_hprd       graphlet_sig_hprd
interactome             interactome
jaccardindex            calculating Jaccard Index
orbit_dependency_count
                        orbit_dependency_count
plot_bipartite          plot disease-gene (or GO term etc.)
                        associations as a bipartite graph
plot_heatmap            similarity matrix heatmap plotting
plot_net                plot a network based on a symmetric disease
                        similarity matrix
plot_topo               plot topological relationship of two gene sets
setWeight               set weight factor
weight                  weight
x2y_conv2_y2x           convert x2ylist to y2xlist
x2y_df2list             convert x-y associations
