# Generated by roxygen2: do not edit by hand

export(annotate_regions)
export(annotatr_cache)
export(build_ah_annots)
export(build_annotations)
export(builtin_annotations)
export(builtin_genomes)
export(plot_annotation)
export(plot_categorical)
export(plot_coannotations)
export(plot_numerical)
export(plot_numerical_coannotations)
export(randomize_regions)
export(read_annotations)
export(read_regions)
export(summarize_annotations)
export(summarize_categorical)
export(summarize_numerical)
import(AnnotationDbi, except='select')
import(AnnotationHub, except='query')
import(GenomicFeatures)
import(GenomicRanges, except=c('union','setdiff','intersect','union'))
import(TxDb.Dmelanogaster.UCSC.dm3.ensGene)
import(TxDb.Dmelanogaster.UCSC.dm6.ensGene)
import(TxDb.Hsapiens.UCSC.hg19.knownGene)
import(TxDb.Hsapiens.UCSC.hg38.knownGene)
import(TxDb.Mmusculus.UCSC.mm10.knownGene)
import(TxDb.Mmusculus.UCSC.mm9.knownGene)
import(TxDb.Rnorvegicus.UCSC.rn4.ensGene)
import(TxDb.Rnorvegicus.UCSC.rn5.refGene)
import(TxDb.Rnorvegicus.UCSC.rn6.refGene)
import(dplyr)
import(ggplot2)
import(methods)
import(org.Dm.eg.db)
import(org.Hs.eg.db)
import(org.Mm.eg.db)
import(org.Rn.eg.db)
import(rtracklayer)
importClassesFrom(GenomeInfoDb,Seqinfo)
importClassesFrom(S4Vectors,Hits)
importClassesFrom(S4Vectors,Rle)
importFrom(GenomeInfoDb,seqlengths)
importFrom(GenomeInfoDb,seqnames)
importFrom(IRanges,IRanges)
importFrom(IRanges,endoapply)
importFrom(readr,read_tsv)
importFrom(regioneR,randomizeRegions)
importFrom(reshape2,melt)
importFrom(stats,as.formula)
importFrom(utils,combn)
importFrom(utils,data)
