ExampleData             Example Datasets used in the manual pages as
                        well as in vignette
MAplot                  Generate maplot after differential expression
                        test
XBSeq                   Express function to carry out XBSeq analysis
XBSeq-package           Differential expression analysis of RNA
                        sequencing data by incorporating non-exonic
                        mapped reads
XBSeqDataSet-class      Class '"XBSeqDataSet"'
XBSeqTest               XBSeq test for differential expression
XBplot                  Examine the distribution of observed signal and
                        background noise
apaUsage                Testing differential alternative
                        polyadenylation (apa) usage by using roar
conditions              Accessor functions for the 'conditions'
                        information in a XBSeqDataSet object.
counts                  Accessor functions for the 'counts' information
                        in a XBSeqDataSet object.
dispEst                 Function to access the dispersion estimation
                        for each gene
dispTable               Access the dispersion table information for a
                        XBSeqDataSet object
estimateRealCount       Preliminary step to estimate the true signal
                        based on observed signal and background noise
estimateSCV             Estimate squared coefficient of variation for
                        each gene
fitInfo                 Accessor function for the fitInfo objects in a
                        XBSeqDataSet
getSignalVars           Estimate variance of the signal based on
                        variance summation law
plotSCVEsts             Plot estimated squared coefficient of variation
