d78e5d4bfb7b395cc500293e255d3365 *CITATION
478f6d884b47eab763de996393296ee7 *DESCRIPTION
43efaf81f65fd2b2adfef4a4020e9fec *INDEX
0cdc6fb85d936b80b6aab38c2ef2d1a7 *Meta/Rd.rds
7f532e677b399de99b8ca9453103405a *Meta/features.rds
95e312db57f3ad861a6c2de4d6769dfe *Meta/hsearch.rds
92debcfd51b979067d387baebae338b4 *Meta/links.rds
ef5ddd556a4816121785985d91523cf7 *Meta/nsInfo.rds
bcd56a493070c646cba5911bf106c988 *Meta/package.rds
8171f9f8d0b1aa12319cba5a6eeef871 *Meta/vignette.rds
6f2880d889b5f9d97e515ac3a38ef1cc *NAMESPACE
9c5e9a2f1497831b4299c3f979e74336 *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/VariantAnnotation
204d0c40c632b51b8c142faa6f3404cb *R/VariantAnnotation.rdb
9c4356bf5b0b9038f751538df0c95f29 *R/VariantAnnotation.rdx
adaba47b526b3386505b0eeb393c6706 *doc/VariantAnnotation.R
dda80bc19d7c0e9ef2eb07bf13a0139e *doc/VariantAnnotation.Rnw
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7ec5fad4a35b571dcd4a2bf5bd3789de *doc/filterVcf.R
926fb0bcdcaa94df63769fd878159035 *doc/filterVcf.Rnw
2db7c2dfc134c6217dd6a07db14ea04f *doc/filterVcf.pdf
879da333b138ca5d31f64b6639487e51 *doc/index.html
be4950fb484e1070402e189e254b1a92 *extdata/chr22.vcf.gz
c303d8a0cc7e6314b5f42348221b0d3b *extdata/chr22.vcf.gz.tbi
a4ca21413e322997ed17c5429e65b9ca *extdata/chr7-sub.vcf.gz
dc5c0ecc784ff39509a164f3020b72f8 *extdata/chr7-sub.vcf.gz.tbi
b325a60a320b6aebb41d41d1dafb9c6d *extdata/ex2.vcf
277341ce20f406ab09a0c23c6bd0d86f *extdata/gl_chr1.vcf
f2a805083bd71e155f977ffb49df2cd5 *extdata/h1187-10k.vcf.gz
fab30e49f0d054d462f8e1737844b204 *extdata/h1187-10k.vcf.gz.tbi
dac0f427ab59994c11859f2b09bab618 *extdata/hapmap_exome_chr22.vcf.gz
ff0775ab73d21645fa114d487e5ebcfd *extdata/hapmap_exome_chr22.vcf.gz.tbi
48852d332eb21dd639b4c6be53762357 *extdata/structural.vcf
671eb8567f0095f53dd287c460d928a1 *help/AnIndex
5d3291d5ecdcdd10d1b1ff141d963fa2 *help/VariantAnnotation.rdb
07f18ed91e77365321d73f00aa8a23f3 *help/VariantAnnotation.rdx
122df0ae770cbc173ffa2863c0c15f22 *help/aliases.rds
fcf79e4d932092162a6e8deb22ce7f23 *help/paths.rds
56d7b759cc30122f1e7f2bd2a719a697 *html/00Index.html
6d9ae48d414f0ec8ee4b73d5a82d1117 *html/GLtoGP.html
b89c37ab83ea2c7f93004bcf95eab63a *html/PROVEANDb-class.html
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58dd6ab82ec9f6b4db037ed0f0a31c4d *html/PolyPhenDbColumns.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
e5a5f7fef33f06033bb23e6852a94a7e *html/SIFTDb-class.html
bee4318840d19a8be40aa7e4195ead58 *html/SIFTDbColumns.html
571e262f2b31e376312b9cbd08a22571 *html/ScanVcfParam-class.html
0fec05be5423cb9391d325c15f3e95d1 *html/VCF-class.html
684a6103caca578547a0a0a0ca33fc62 *html/VCFHeader-class.html
719cfc0621f7675f04b328f06d164c64 *html/VRanges-class.html
229f032d1f897453152b4041a28e1072 *html/VRangesList-class.html
1d651b100744ec8366bb95b4530b3e80 *html/VariantType-class.html
f2811fab19c0148044bfe1f5797b533a *html/VcfFile-class.html
d14e09d1e6015b537c7d66a0d0586d9f *html/defunct.html
580e7fdcc8d40ce83807571c624ff55f *html/filterVcf-methods.html
7813619c28d62f9361432f3a2ca81f55 *html/genotypeToSnpMatrix-methods.html
d4e87a5728d5c9fe3d0ef146dd482e89 *html/getTranscriptSeqs-methods.html
062ff77e45deff7f79d73f7165b15d52 *html/indexVcf-method.html
145b34a03972df2b85fba54e42161375 *html/isSNV-methods.html
bfca0e8490e2f301166d7a0bb4fb7e04 *html/locateVariants-methods.html
280cd702b73857910f4465b2e34979d6 *html/predictCoding-methods.html
5b1e3d5cc43accbeee05ca4e36f9f304 *html/probabilityToSnpMatrix.html
82e5ee7e9ff66a9c3fc071ba371cb00c *html/readVcf-methods.html
c1d3d9cf788487202a569c000f0416b5 *html/scanVcf-methods.html
4728ffe3ba6a63c92998ab32e31ffa5b *html/seqinfo-method.html
996a9aca55a9d4e318cdba790746317c *html/snpSummary.html
69c57ed7dae866b34192e9e0940a4da6 *html/summarizeVariants-methods.html
907a1b4c998c206b45ef7a59a2d7702a *html/writeVcf-methods.html
b5528dacbc2b41503e25c546c0629ea8 *libs/i386/VariantAnnotation.dll
27fdb3c938b66f0fcd33ace87d5cb470 *libs/x64/VariantAnnotation.dll
17f1c6f05e7a9ff7756b6efabce3f745 *scripts/test_Rplinkseq.R
b7a9592a5de31dd84a3f7e8d1e0332de *unitTests/cases/FORMAT_header_no_SAMPLEs.vcf
6e6064d7c429a35bc80235a253eed6f3 *unitTests/cases/VarScan_header.vcf
0c5f14796bf4eb3683ceff8e559f43d7 *unitTests/cases/banded_gvcf.vcf
1e72c29c93e39910d59e569aad8db3db *unitTests/cases/expand.vcf
b94fb85e5ef300d87ab437d75f899b5a *unitTests/cases/fewer-FORMAT-than-GENO.vcf
3e81314c823a90ca24120330c546e7b0 *unitTests/cases/missing-FORMAT-metadata-elt.vcf
ba4c3b28d5f63740fda11e70a19eccd7 *unitTests/cases/mixedStructural.vcf
0230db3391a4a664fd5e2236fd0e5a92 *unitTests/cases/multiple_INFO_fields.vcf
752d9d47c17d8f66791ce8804d88dbf6 *unitTests/cases/negative_FORMAT_Number.vcf
39d8ae8aa155e4bac07e9215017143e7 *unitTests/cases/no_FORMAT_column.vcf
4be0f539f13136116e1df4292adeb571 *unitTests/cases/no_GENO_row.vcf
a99d3b281abdd928c30fd147de3848a0 *unitTests/cases/no_INFO_header.vcf
0c5bd63cfafbad13a8591b4963e0d411 *unitTests/cases/unspecified_INFO_FORMAT_fields.vcf
0b5b4448b336d5a5b56d18cf818f9712 *unitTests/test_SIFTandPolyPhen.R
00158d8fd4f8a5d3b57b6ffd6568a17e *unitTests/test_ScanVcfParam-class.R
ebcc3b0eb0b0d8d35618bcd081768b0a *unitTests/test_VCF-class.R
e07cf8ff3ef774a4702083cd51bb946c *unitTests/test_VRanges-class.R
ff0b44d8aee8150a56bff44075467583 *unitTests/test_expand-methods.R
9561c767f5acb5fc74cd359c678612cf *unitTests/test_filterVcf.R
7c00151d0528b740a94ddb9a8504898a *unitTests/test_genotypeToSnpMatrix.R
2c2205ed5a0c6d352887365ce90f025a *unitTests/test_isSNV.R
3fb1e09a0eb712fc6dac04bac8c2bf3a *unitTests/test_locateVariants-methods.R
b92e0e7b951b75b850b37d0204efa1f5 *unitTests/test_predictCoding-methods.R
f674942fdd74339349c66154a0a324e2 *unitTests/test_readVcf-methods.R
8afab6fc17e9f3105b9b13665c8d10de *unitTests/test_scanVcf.R
e45debe5cc9e5a797032c5ece476a74c *unitTests/test_snpSummary.R
d98bfd1bf44ccafabe740b9ae42d1208 *unitTests/test_summarizeVariants-methods.R
63c02835c8ecc7f75d976dff37e41444 *unitTests/test_writeVcf-methods.R
