Package: STROMA4
Version: 1.2.0
Date: 2017-03-23
Title: Assign Properties to TNBC Patients
Authors@R: c(person("Sadiq", "Saleh", email =
        "sadiq.mehdiismailsaleh@mail.mcgill.ca", role = c("aut",
        "cre")), person("Michael", "Hallett", email =
        "michael.t.hallett@mcgill.ca ", role = "aut"))
Description: This package estimates four stromal properties identified
        in TNBC patients in each patient of a gene expression datasets.
        These stromal property assignments can be combined to subtype
        patients. These four stromal properties were identified in
        Triple negative breast cancer (TNBC) patients and represent the
        presence of different cells in the stroma: T-cells (T), B-cells
        (B), stromal infiltrating epithelial cells (E), and desmoplasia
        (D). Additionally this package can also be used to estimate
        generative properties for the Lehmann subtypes, an alternative
        TNBC subtyping scheme (PMID: 21633166).
Depends: R (>= 3.4), Biobase, BiocParallel, cluster, matrixStats,
        stats, graphics, utils
License: GPL-3
LazyData: true
RoxygenNote: 5.0.1
Suggests: breastCancerMAINZ
biocViews: GeneExpression, BiomedicalInformatics, Classification,
        Microarray, RNASeq, Software
NeedsCompilation: no
Packaged: 2017-10-31 02:06:05 UTC; biocbuild
Author: Sadiq Saleh [aut, cre],
  Michael Hallett [aut]
Maintainer: Sadiq Saleh <sadiq.mehdiismailsaleh@mail.mcgill.ca>
Built: R 3.4.2; ; 2017-10-31 08:23:01 UTC; windows
