acceptor.m              acceptor.m
addEnsemblAnnotation    addEnsemblAnnotation
callPrimer3             callPrimer3
checkPrimer             checkPrimer
compatible_cds          compatible_cds
compatible_tx           compatible_tx
donor.m                 donor.m
eventOutcomeCompare     eventOutcomeCompare
eventOutcomeTranslate   eventOutcomeTranslate
eventPlot               eventPlot
extendROI               extendROI
extractSpliceEvents     extractSpliceEvents
extractSpliceSites      extractSpliceSites
findCompatibleEvents    findCompatibleEvents
findCompatibleExon      findCompatibleExon
findTX                  findTX
getPCRsizes             getPCRsizes
getRegionDNA            getRegionDNA
insertRegion            insertRegion
makeROI                 makeROI
makeUniqueIDs           makeUniqueIDs
pcr_result1             pcr_result1
plot_seqlogo            plotting sequence logo
primers                 primers
psiPlot                 psiPlot
region_minus_exon       region_minus_exon
removeRegion            removeRegion
roi                     roi
shapiroAcceptor         shapiroAcceptor
shapiroDensity          shapiroDensity
shapiroDonor            shapiroDonor
splice_data             splice_data
splice_fasta            splice_fasta
splitPCRhit             splitPCRhit
thecds                  thecds
theexons                theexons
valid_cds               valid_cds
valid_tx                valid_tx
