80857d043e3b55271cb91476386cd4c3 *CITATION
956134d56c3650761de71eec7c13c3eb *DESCRIPTION
9de12d1faf0e186d8b0cd4fd885aee44 *INDEX
c94c9cb6ce179fbcf2454a124becbff5 *Meta/Rd.rds
317735fd3091c51c4b67896cd2ea82be *Meta/features.rds
d4e457c782f5125e5183d9eba7872727 *Meta/hsearch.rds
ee6f63643bd27bccd68d95d661c59152 *Meta/links.rds
e76ba0114881953d34155f4b3ec0bf89 *Meta/nsInfo.rds
76ab41874aadd525da31aed72e2c4cfd *Meta/package.rds
714537939a593b0b586df5c8971cd000 *Meta/vignette.rds
35a79ab38dbab6e7c79b676116a4aff8 *NAMESPACE
ebf0fc819595d631b8bf280c4b049940 *R/Ringo
7288a1207bf6d088651eebdfdf7c6915 *R/Ringo.rdb
686b485f2914ecbf2537ce9501cb8e8e *R/Ringo.rdx
089e29bd75b0820e1f9801c950320f65 *agilentData/H3K4Me3_Tc1Liver_sol1_mmChr17_part.txt
5415524a104b5816a944f4971595d5ec *agilentData/arrayDescriptionAMEXP1029_part.txt
5a2434a37ee75088c3af5efcccc5240d *agilentData/mm9chr17.RData
c5eb37db0745300dbd8bb02ee3ff18e1 *agilentData/targets.txt
ac8b5e5600b8749e7c2f5bd1a84d616f *doc/Ringo.R
3839816a13a162c65bbab97c7a0986a5 *doc/Ringo.Rnw
fe94365f0581c96f14225d95b3b2fd2b *doc/Ringo.pdf
18fbaa454af6ec37d30f1798fedc3716 *doc/index.html
b8ad09fcb16b97300782f378c5505754 *exData/MOD_2003-12-05_SUZ12_1in2.ndf
93dcafa177f6105c8602c097f9b79b98 *exData/MOD_2003-12-05_SUZ12_1in2.pos
fe86e5c1cf343c486c4985a9e5a427b8 *exData/MOD_20551_PMT1_pair.txt
3f7ebd178b21eaf7d160d607a2e42ef4 *exData/MOD_20742_PMT1_pair.txt
8e164612155b94980a9cb3b9b7a148cb *exData/README.txt
f39530a6d35b8a18e8dd075205b37bd3 *exData/exampleProbeAnno.rda
b1f0e9e8dafc00780930776bfd6e9aa5 *exData/exampleX.rda
8455900bba7d71a31bbcffdbece9420e *exData/example_targets.txt
4bb3efa4b569917acddee6e3d9d5db33 *exData/reportersInexactMatchesHg18.rda
d020c2bea3ee4cc5de50e947df20e391 *exData/spottypes.txt
6ec1bba00f10d458b6a04793e3e9a231 *help/AnIndex
0c9ed5a6b441a54cf2ccce9fcf3c9f02 *help/Ringo.rdb
e13786bd654bcc16a11f9507533f1b67 *help/Ringo.rdx
c9db9ead6238c589edfb28e99ab039c1 *help/aliases.rds
de0e978435053bac39727024e3b53523 *help/paths.rds
0f356b6677a1027a62e2d67034d5f676 *html/00Index.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
12ea3e55152b852f64f50a83cee1f75c *html/Ringo-internal.html
afa0b3184821dd84b094a3a8f27c9aae *html/arrayImage.html
290c4f0a40312d3785638ff9ff94cfcf *html/asExprSet.html
c61dad716e04a55d5208717e7cc3824c *html/autocorr.html
abee07dcf38a0c360fea7486114788f6 *html/cherByThreshold.html
135d7e3ea2b5aea73549d9a1b5f42406 *html/cherClass.html
5f72e292d370345bd21beadaa790c14f *html/chipAlongChrom.html
b77b23d2645d4f0b4d6a08391dda179f *html/chipAlongChromOld.html
3dc8c26d91e43b42e8154a254c837a82 *html/computeRunningMedians.html
fc276bc1d408977051e1e57f6e196fa2 *html/compute_gc.html
2e568b9a4ef91d0d558af89cee5bc863 *html/compute_sliding_t.html
a3678719dd8a5ecee0bc8b739f6e6463 *html/corrPlot.html
c45abe022c75b3326bacaae5ba98173b *html/exportCherList.html
76cfa3a59ec7d98d0b2aa6f989329896 *html/extractProbeAnno.html
18a31fdd65dadbd3290fccbd99f6ef7a *html/features2Probes.html
0c7710f4f014c8f1e8c9159d32d544e0 *html/findChersOnSmoothed.html
a39e632373ebd728a1b45007b5ca1830 *html/ftr2xys.html
9ae9c40c54fa4395109deca1414a9b4f *html/getFeats.html
90cc35f8040642b9e67889344e11f6f2 *html/newCER.html
48712d3f7a0d87734355ea71c54874ef *html/nimblegenNorm.html
7a32146fc17cf485a897bfef2a57f33e *html/nonzero.html
8085ca235781a2dae94992e2a12a8907 *html/plotAutocorr.html
1f0fdeb9c51c58a1e0e2d356948f29c2 *html/plotBM.html
191a62b0469159a1f251f3b2eda06bd7 *html/plot_cher.html
79ccb948b5c00d960b045f6855738c0b *html/posToProbeAnnoEnvironment.html
89b9baa5aa81863b12472ace9dc31a1f *html/preprocess.html
5c7d852bb7fe7ab800ad86c9b38f778b *html/probeAnnoClass.html
2abf7d03a66c986d1d0599da8ab88acd *html/qopS4.html
251e9da6bb23c15f3ee7273c3787f32d *html/quantilesOverPositions.html
4ec7c24294a500ec61af5177ff0edf37 *html/readNimblegen.html
011b05d6c27d04c0ddd285b8f1804a31 *html/regionoverlap.html
d17d335cf288018a652fd98cf269904b *html/relateCERs.html
e5eda8d38585254c17b0a79d09893732 *html/sigGOTable.html
9d1d89dd1e7929a0482a938ee0c96e3e *html/sliding_meansd.html
be74914d43d270e6b0dc3f36083c9a65 *html/sliding_quantile.html
180085533fc5249044dc5673d4c69908 *html/twoGaussiansNull.html
2ce738ee42e5b4e47a4f7007b6b692a2 *html/upperBoundNull.html
117fdbb35af38cf0d5613e81b0c9cb86 *html/validProbeAnno.html
0b073194eb41799d3c46ef64a23c1d31 *libs/i386/Ringo.dll
ce85ca193d9c65e6271d34991177352f *libs/x64/Ringo.dll
a4e348745bcee4d7022d2807ffd80359 *scripts/condenseBlatOutput.pl
26ace4b02da8e5d607f0566ccadc4e6a *scripts/condenseExonerateOutput.pl
ac0161dfde18540822564e99cdc6ae6f *scripts/condenseMUMmerOutput.pl
eebb5df013fcec9efeb3462c04cd9fb5 *scripts/convertSampleKeyTxt.R
abc83ca087b05944e99b736a18ec9cc0 *scripts/extractProbeSequenceFasta.pl
651d61b0dda52b6e924b69196870505d *scripts/graphChers2Transcripts.R
ed1c3d0e9bff0018ccf916c22a828c28 *scripts/makeProbeAnno.R
f69c0dd79ddeb4513eb72316c1a4b791 *scripts/mapReportersWithBiostrings.R
a97db632c7fe0facd9d1db343eeebc17 *scripts/retrieveGenomicFeatureAnnotation.R
