RJMCMCNucleosomes-package
                        RJMCMCNucleosomes: Bayesian hierarchical model
                        for genome-wide nucleosome positioning with
                        high-throughput short-read data (MNase-Seq)
RJMCMC_result           Nucleosomes obtained by running RJMCMC function
                        using reads from reads_demo_02 dataset (for
                        demo purpose).
mergeAllRDSFilesFromDirectory
                        Merge nucleosome information from all RDS files
                        present in a same directory. Beware that only
                        nucleosome information from same chromosome
                        should be merged together.
mergeRDSFiles           Merge nucleosome information from selected RDS
                        files.
plotNucleosomes         Generate a graph of nucleosome positions with
                        read coverage
postTreatment           A post-treatment function to merge closely
                        positioned nucleosomes, from the same
                        chromosome, identified by the 'rjmcmc'
                        function.
print.rjmcmcNucleosomes
                        Formated output of predicted nucleosomes
print.rjmcmcNucleosomesBeforeAndAfterPostTreatment
                        Formated output of predicted nucleosomes
print.rjmcmcNucleosomesMerge
                        Formated output of predicted nucleosomes
reads_demo_01           Forward reads and reverse reads in 'GRanges'
                        format (for demo purpose).
reads_demo_02           Forward reads and reverse reads in 'GRanges'
                        format (for demo purpose).
rjmcmc                  Nucleosome positioning mapping on a segment
rjmcmcCHR               Nucleosome positioning mapping on a large
                        segment, up to a chromosome
segmentation            Split a 'GRanges' containing reads in a list of
                        smaller segments for the 'rjmcmc' function.
syntheticNucleosomeReads
                        Simulated dataset of reads generated by
                        'nucleoSim' package (for demo purpose).
