pathostat {PathoStat}R Documentation

Build PathoStat-class object from its phyloseq component.

Description

Build PathoStat-class object from its phyloseq component.

Usage

pathostat(physeq1)

Arguments

physeq1

phyloseq object

Value

pstat The pathostat object generated from the given phyloseq object

Examples

rich_dense_biom  = system.file("extdata", "rich_dense_otu_table.biom", 
    package="phyloseq")
phyob <- phyloseq::import_biom(rich_dense_biom)
pstat_biom <- pathostat(phyob)
[Package PathoStat version 1.4.1 Index]