Package: MEDIPS
Type: Package
Title: DNA IP-seq data analysis
Version: 1.30.0
Date: 2016-11-30
Author: Lukas Chavez, Matthias Lienhard, Joern Dietrich, Isaac Lopez Moyado
Maintainer: Lukas Chavez <l.chavez@dkfz.de>
Description: MEDIPS was developed for analyzing data derived from
        methylated DNA immunoprecipitation (MeDIP) experiments followed
        by sequencing (MeDIP-seq). However, MEDIPS provides functionalities for the analysis of any kind of quantitative
        sequencing data (e.g. ChIP-seq, MBD-seq, CMS-seq and others)
        including calculation of differential coverage between groups
        of samples and saturation and correlation analysis.
License: GPL (>=2)
LazyLoad: yes
Depends: R (>= 3.0), BSgenome, Rsamtools
Imports: GenomicRanges, Biostrings, graphics, gtools, IRanges, methods,
        stats, utils, edgeR, DNAcopy, biomaRt, rtracklayer,
        preprocessCore
Suggests: BSgenome.Hsapiens.UCSC.hg19, MEDIPSData, BiocStyle
biocViews: DNAMethylation, CpGIsland, DifferentialExpression,
        Sequencing, ChIPSeq, Preprocessing, QualityControl,
        Visualization, Microarray, Genetics, Coverage,
        GenomeAnnotation, CopyNumberVariation, SequenceMatching
NeedsCompilation: no
Packaged: 2017-10-31 00:08:44 UTC; biocbuild
Built: R 3.4.2; ; 2017-10-31 06:03:59 UTC; windows
