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| as.GRanges | Cast to GRranges |
| as.GRanges-method | Cast to GRranges |
| dmrscan | DMR Scan function |
| DMRScan.methylationData | DMRScan |
| DMRScan.phenotypes | DMRScan |
| estimateThreshold | EstimateWindowThresholds |
| estimateWindowThreshold | EstimateWindowThresholds |
| getRegions | Method getRegions |
| getRegions-method | Method getRegions |
| head-method | Cat the head of a list of regions in a RegionList object |
| length-method | Calculate the length of a region in terms of CpGs |
| makeCpGgenes | Cluster |
| makeCpGregions | Cluster |
| makeRegions | Cluster |
| manyWindowSizeScanner | Method Fixed window size scan for a sequence of window sizes |
| manyWindowSizeScanner-method | Method Fixed window size scan for a sequence of window sizes |
| names-method | Get the names of all probes within a region |
| nCpG | Method nCpG |
| nCpG-method | Method nCpG |
| oneWindowSizeScanner | Method Fixed window size scan for one window size |
| oneWindowSizeScanner-method | Method Fixed window size scan for one window size |
| pos | Method pos |
| pos-method | Method pos |
| print-method | Print a region |
| pVal | Method get pvalue |
| pVal-method | Method get pvalue |
| range-method | Get the genomic position of a Region |
| Region | Shorthand for initializing region |
| Region-class | Object of type Region |
| RegionList | Shorthand for initializing RegionList |
| RegionList-class | Class RegionList Class 'RegionList' is a collection of Regions |
| Rt | Method Fixed window size scan for one window size |
| Rt-method | Method Fixed window size scan for one window size |
| setRegion | Method setRegion |
| setRegion-method | Method setRegion |
| show-method | Show a region |
| sort-method | Sort a set of regions on p-value in a RegionList object |
| St | Method Fixed window size scan for a sequence of window sizes |
| tVal | Method get T statistic for a region |
| tVal-method | Method get T statistic for a region |
| [ | Get Object Region |
| [-method | Get Object Region |
| [[ | Get Object Region |
| [[-method | Get Object Region |