DMRScan.methylationData
                        DMRScan
DMRScan.phenotypes      DMRScan
Region                  Shorthand for initializing region
Region-class            Object of type Region
RegionList              Shorthand for initializing RegionList
RegionList-class        Class RegionList Class 'RegionList' is a
                        collection of Regions
[                       Get Object Region
[[                      Get Object Region
as.GRanges              Cast to GRranges
dmrscan                 DMR Scan function
estimateThreshold       EstimateWindowThresholds
getRegions              Method getRegions
head,RegionList-method
                        Cat the head of a list of regions in a
                        RegionList object
length,Region-method    Calculate the length of a region in terms of
                        CpGs
makeCpGgenes            Cluster
makeCpGregions          Cluster
manyWindowSizeScanner   Method Fixed window size scan for a sequence of
                        window sizes
nCpG                    Method nCpG
names,Region-method     Get the names of all probes within a region
oneWindowSizeScanner    Method Fixed window size scan for one window
                        size
pVal                    Method get pvalue
pos                     Method pos
print,Region-method     Print a region
range,Region-method     Get the genomic position of a Region
setRegion               Method setRegion
show,Region-method      Show a region
sort,RegionList-method
                        Sort a set of regions on p-value in a
                        RegionList object
tVal                    Method get T statistic for a region
