Package: DMCHMM
Type: Package
Title: Differentially Methylated CpG using Hidden Markov Model
Version: 1.0.0
Author: Farhad Shokoohi
Maintainer: Farhad Shokoohi <shokoohi@icloud.com>
Description: DMCHMM is a novel profiling tool for identifying 
    differentially methylated CpG sites using Hidden Markov Model in bisulfite
    sequencing data.
Depends: R (>= 3.4.0), SummarizedExperiment, methods, S4Vectors,
        BiocParallel, GenomicRanges, IRanges, fdrtool
Imports: utils, stats, grDevices, rtracklayer, multcomp, calibrate,
        graphics
Suggests: testthat, knitr
VignetteBuilder: knitr
biocViews: DifferentialMethylation, Sequencing, HiddenMarkovModel,
        Coverage
License: GPL-3
Date: 2017-08-22
Encoding: UTF-8
LazyData: true
BugReports: https://github.com/shokoohi/DMCHMM/issues
RoxygenNote: 6.0.1
NeedsCompilation: no
Packaged: 2017-10-31 02:19:22 UTC; biocbuild
Built: R 3.4.2; ; 2017-10-31 04:17:10 UTC; windows
