529e063c65c14f728ec5510a4c2f386a *DESCRIPTION
68bb9ab215ae4b272ec27b23211bae93 *INDEX
bb087882b665fe8e24160a58aedd00ce *LICENSE
1a43f575faf0fa3e13ed7f6ecf98d692 *Meta/Rd.rds
fce881bfefe1fa8a3f01979ec557fb82 *Meta/data.rds
a46f1debdc1f45796be2b2a0e6b3b378 *Meta/features.rds
07352fb8ed8f87afa7a71105c963f59e *Meta/hsearch.rds
21e1cb2c362ec260b50a16c5285e7a38 *Meta/links.rds
bd750398faa3a9dbd6071124d9e8de72 *Meta/nsInfo.rds
dd7823c98d1562ec86ca92cff97744b5 *Meta/package.rds
45a40a42c78479d5274dca4f6c5a9e95 *Meta/vignette.rds
529d6739f5d3e673afc9a295d7862ebe *NAMESPACE
ecb76a5811661ba7a362b145f02bf20b *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/CNEr
4c9c7769c407ebc0c14e68bdbd15dd24 *R/CNEr.rdb
06c137d6e7b00c96538621209c8c5e10 *R/CNEr.rdx
a595fc03c3b3d57f048c4e21a18c7cd2 *data/CNEDanRer10Hg38.rda
85fca72fe185084dbb12393bbb56c94d *data/CNEHg38DanRer10.rda
d7aff5e8ce701e2ce81feb5ba8434b73 *data/axisTrack.rda
05e4a1691e623dbc5d5132c625c3e952 *data/cneFinalListDanRer10Hg38.rda
3e2c63d5839dce07a3f8a017924633e6 *data/cpgIslands.rda
f636989efeff6b5effb53b546919718f *data/grangesPairsForDotplot.rda
fb9424ea5abd0f82ef1105e8462b8a1a *data/refGenes.rda
9a69371c94a2e1b3c0314f8e3ceb6782 *doc/CNEr.R
2de5bf342921f97286a553613e6aa05b *doc/CNEr.Rmd
3195e44fe88845c36870bb6b9040e703 *doc/CNEr.html
0f399a35cf4d483a0f0841c83e4aaa2c *doc/PairwiseWholeGenomeAlignment.R
757ca2f473ff91bd78bd8cef0d315e38 *doc/PairwiseWholeGenomeAlignment.Rmd
5092e0adb9fe24e45e53a21fa1b4501d *doc/PairwiseWholeGenomeAlignment.html
5fe54fa153d8ed86ace9301a0b2b7d82 *doc/index.html
e1225e2387a670279ab8e2f5695a5b62 *extdata/chr4.hg19.galGal3.net.axt.gz
9c8c4347211a68e2d2bdca8b3eb2a995 *extdata/cne2wBf_AstMex102_danRer10_48_50
144c4e621b5903d66fce90d40ff3452a *extdata/cne2wBf_cteIde1_danRer10_100_100
703b7fae3bd724a255a201e07f0f19ff *extdata/cne2wBf_cypCar1_danRer10_100_100
aad28bc8c6f7865a28ec3b4c06aa7517 *extdata/cne2wBf_danRer10_hg38_45_50
ee3f3bafa1ea2dd69057da90d4df026a *extdata/danRer10.hg38.net.axt
f0c8e5aa59cfa775c42fa54300a7e108 *extdata/danRer10CNE.sqlite
32f9e6948d016e9935633c6f1c34ed43 *extdata/filter_regions.danRer10.bed
8f357f770b042ed678b4f2b38e687053 *extdata/filter_regions.hg38.bed
83a080592fbc9a9e1e3c8045874bc4b6 *extdata/hg38.danRer10.net.axt
109773cc892befc7f16e64051a2f3180 *extdata/rmsk.fa
ecfff71e276939f8799b675c0035c131 *help/AnIndex
0e3ec073fe44b27eb50a6f32dd5302df *help/CNEr.rdb
684afc1795531fb47d5a6ee3cafd0bdd *help/CNEr.rdx
3b364f0e11356527b2986ebbf19ee347 *help/aliases.rds
3387223d3a5809cbaf2e328208ddf44e *help/paths.rds
561fa7e8a7cf90e50ce1b22670ca54c8 *html/00Index.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
99a481289a4c4a700e2d772068ceb36f *libs/i386/CNEr.dll
e5ddae7d32c9db7bbf3313b41a8b181b *libs/x64/CNEr.dll
ec85324af0f35f446e7f94ec7477fd3c *obsolete/CNEr.Rnw
3b502ef13330de1cd98dc4288a6f43d1 *obsolete/ceScan.r
d14cd8fb9911e5da6a2ba93af6d5974a *obsolete/ceScanR.r
0b52e0839eedfa011db6788f30472403 *obsolete/class.r
cdd26c6f3a003ce2e80db8921c7a7857 *obsolete/src/ceScan.c
b9b504316a8eeb190646972e165f979f *obsolete/src/ceScanBranch1.c
ed4391ac6a30aa3da32d63d7cbf5b17a *obsolete/src/ceScanBranch2.c
0a1fe70559c587a9104001f5203af75d *obsolete/src/compile
9e3c821c3f64ccfe466aa466d5f82ec5 *scripts/danRer10Pipeline.R
5f67d785a452ecc6f8168088a7b8b0c9 *scripts/prepareData.R
