# Generated by roxygen2: do not edit by hand

S3method(bpr_optim,list)
S3method(bpr_optim,matrix)
S3method(eval_function,polynomial)
S3method(eval_function,rbf)
export(boxplot_cluster_gex)
export(bpr_cluster_wrap)
export(bpr_optim)
export(bpr_predict_wrap)
export(create_methyl_region)
export(create_polynomial_object)
export(create_prom_region)
export(create_rbf_object)
export(eval_function)
export(eval_probit_function)
export(plot_cluster_prof)
export(plot_fitted_profiles)
export(plot_scatter_gex)
export(pool_bs_seq_rep)
export(predict_model_gex)
export(preprocess_bs_seq)
export(preprocess_final_HTS_data)
export(process_haib_caltech_wrap)
export(read_bs_bismark_cov)
export(read_bs_encode_haib)
export(read_chrom_size)
export(read_encode_cgi)
export(read_rna_encode_caltech)
export(train_model_gex)
import(GenomicRanges)
import(IRanges)
import(MASS)
import(S4Vectors)
import(assertthat)
import(doParallel)
import(e1071)
import(earth)
import(foreach)
import(graphics)
import(parallel)
import(randomForest)
importFrom(data.table,data.table)
importFrom(data.table,fread)
importFrom(methods,is)
importFrom(stats,dbinom)
importFrom(stats,dnorm)
importFrom(stats,formula)
importFrom(stats,lm)
importFrom(stats,optim)
importFrom(stats,pnorm)
importFrom(stats,predict)
