# Generated by roxygen2: do not edit by hand

export("coords<-")
export("image<-")
export("label<-")
export("metadata<-")
export("nseq<-")
export("scale<-")
export(CoverageHeatmap)
export(Heatmap)
export(PWMScanHeatmap)
export(PatternHeatmap)
export(coords)
export(default_color)
export(getScale)
export(heatmapOptions)
export(label)
export(metadata)
export(nseq)
export(plotHeatmap)
export(plotHeatmapList)
export(plotHeatmapMeta)
export(plotPatternDensityMap)
export(plot_clusters)
export(plot_legend)
export(scale)
export(smoothHeatmap)
export(xm)
export(ym)
exportClasses(Heatmap)
exportMethods("coords<-")
exportMethods("image<-")
exportMethods("label<-")
exportMethods("metadata<-")
exportMethods("nseq<-")
exportMethods("scale<-")
exportMethods(CoverageHeatmap)
exportMethods(PWMScanHeatmap)
exportMethods(PatternHeatmap)
exportMethods(coords)
exportMethods(image)
exportMethods(label)
exportMethods(length)
exportMethods(metadata)
exportMethods(nseq)
exportMethods(plotHeatmap)
exportMethods(rev)
exportMethods(scale)
exportMethods(smoothHeatmap)
exportMethods(width)
exportMethods(xm)
exportMethods(ym)
importClassesFrom(Matrix,sparseMatrix)
importFrom(Biostrings,DNAStringSet)
importFrom(Biostrings,PWMscoreStartingAt)
importFrom(Biostrings,matchPWM)
importFrom(Biostrings,matchPattern)
importFrom(Biostrings,maxScore)
importFrom(Biostrings,minScore)
importFrom(Biostrings,start)
importFrom(Biostrings,startIndex)
importFrom(EBImage,filter2)
importFrom(EBImage,resize)
importFrom(GenomeInfoDb,seqlevels)
importFrom(GenomicRanges,coverage)
importFrom(GenomicRanges,strand)
importFrom(IRanges,Views)
importFrom(IRanges,mean)
importFrom(IRanges,revElements)
importFrom(IRanges,tile)
importFrom(KernSmooth,bkde2D)
importFrom(RColorBrewer,brewer.pal)
importFrom(grDevices,colorRamp)
importFrom(grDevices,colorRampPalette)
importFrom(grDevices,hcl)
importFrom(grDevices,rainbow)
importFrom(grDevices,rgb)
importFrom(graphics,abline)
importFrom(graphics,axis)
importFrom(graphics,box)
importFrom(graphics,grconvertX)
importFrom(graphics,grconvertY)
importFrom(graphics,layout)
importFrom(graphics,legend)
importFrom(graphics,lines)
importFrom(graphics,mtext)
importFrom(graphics,par)
importFrom(graphics,plot)
importFrom(graphics,rect)
importFrom(graphics,text)
importFrom(methods,as)
importFrom(methods,new)
importFrom(plotrix,color.legend)
importFrom(stats,aggregate)
importMethodsFrom(BiocGenerics,width)
importMethodsFrom(Matrix,summary)
