genotype.saap           SAAP genotype dataset
genotype.saap.msa       SAAP genotype dataset (msa)
genotype.snp            SNP genotype dataset
genotype.snp.msa        SNP genotype dataset (msa)
phenotype.saap          Phenotype dataset
phenotype.snp           Phenotype dataset
plotGenphenBayes        Visualizing the genphen results of
                        runGenphenBayes
plotGenphenRfSvm        Visualizing the genphen results of runGenphenRf
                        or runGenphenSvm
plotManhattan           Visualizing genphen results with Manhattan
                        plots
plotSpecificGenotype    Visualizing specific genotypes
runGenphenBayes         Conducting genetic association analysis with
                        Bayesian inference, using hierarchical models.
runGenphenRf            Conducting genetic association analysis with
                        random forest
runGenphenSvm           Conducting genetic association analysis with
                        linear support vector machines (LSVM)
