CyData-class            CyData class and methods
[,CyData,ANY-method     Subsetting and combining CyData
countCells              Count cells in high-dimensional space
diffIntDistr            Compute differences in intensity distributions
dnaGate                 Gate events based on DNA channels
expandRadius            Expand the hypersphere radius
findFirstSphere         Identifies the first non-redundant hyperspheres
intensityRanges         Define intensity ranges
interpretSpheres        Interactive interpretation of hyperspheres
medIntensities          Compute median marker intensities
neighborDistances       Compute distances to neighbors
nmarkers                CyData getters and setters
normalizeBatch          Normalize intensities across batches
outlierGate             Create an outlier gate
packIndices             Pack or unpack indices
pickBestMarkers         Pick best markers
plotCellLogFC           Plot cell or hypersphere data
poolCells               Pool cells for pre-processing
prepareCellData         Prepare mass cytometry data
recountCells            Recount cells in each group
spatialFDR              Compute the spatial FDR
