exonsToIntrons	exonsToIntrons
getBranchpointSequence	getBranchpointSequence
getCanonical3SS	getCanonical3SS
getExonDists	getExonDists
getPPT	getPPT
getQueryLoc	getQueryLoc
gtfToExons	gtfToExons
makeRegions	makeRegions
plotBranchpointWindow	plotBranchpointWindow
plotStructure	plotStructure
predictBranchpoints	predictBranchpoints
predictionsToStats	predictionsToStats
readQueryFile	readQueryFile
snpToQuery	snpToQuery
