getQueryLoc             Find the closest 3' and 5' exons to a
                        branchpointer query
gtfToExons              Convert GTF file to exon location file
makeRegions             Make branchpoint window regions
plotBranchpointWindow   Plots branchpointer predictions
plotStructure           Plots transcript structures
predictBranchpoints     Predict branchpoint probability scores
predictionsToStats      Convert SNP branchpoint predictions across the
                        branchpoint window to an intronic summary
readQueryFile           Read a query file
snpToQuery              Gets a branchpointer formatted query from
                        refsnp ids
