Package: branchpointer
Type: Package
Title: Prediction of intronic splicing branchpoints
Version: 1.0.0
Date: 2017-03-01
Author: Beth Signal
Maintainer: Beth Signal <b.signal@garvan.org.au>
Description: Predicts branchpoint probability for sites in intronic
        branchpoint windows. Queries can be supplied as intronic
        regions; or to evaluate the effects of mutations, SNPs.
License: BSD_3_clause + file LICENSE
LazyData: TRUE
Depends: caret, R(>= 3.4)
Imports: plyr, kernlab, gbm, stringr, cowplot, ggplot2, biomaRt,
        Biostrings, parallel, utils, BSgenome.Hsapiens.UCSC.hg38,
        rtracklayer, GenomicRanges, IRanges, S4Vectors, data.table
Suggests: knitr, BiocStyle
RoxygenNote: 6.0.1
VignetteBuilder: knitr
biocViews: Software, GenomeAnnotation, GenomicVariation,
        MotifAnnotation
NeedsCompilation: no
Packaged: 2017-04-25 01:52:18 UTC; biocbuild
Built: R 3.4.0; ; 2017-04-25 02:40:20 UTC; windows
