Eigensystem-class       The Eigensystem class
EigensystemPlotParam-class
                        The EigensystemPlotParam class
HeLaData                Human HeLa Cell Cycle Expression
StarvationData          Human HeLa Cell Cycle Expression
YeastData               Yeast Cell Cycle Expression
assayColorMap<-         Set assayColorMap for object of
                        EigensystemPlotParam
biosvd                  Package for high-throughput data processing,
                        outlier detection, noise removal and dynamic
                        modeling
compute,Eigensystem-method
                        Compute the eigensystem for a feature by assay
                        matrix
contrast<-              Set contrast for object of EigensystemPlotParam
exclude,Eigensystem-method
                        Excludes specified eigenfeatures/eigenassays
                        from the data
featureColorMap<-       Set featureColorMap for object of
                        EigensystemPlotParam
figure<-                Set figure for object of EigensystemPlotParam
filenames<-             Set filenames for object of
                        EigensystemPlotParam
negativeValues<-        Set negativeValues for object of
                        EigensystemPlotParam
palette<-               Set palette for object of EigensystemPlotParam
path<-                  Set path for object of EigensystemPlotParam
plot,Eigensystem,EigensystemPlotParam-method
                        Generate visualizations of the eigensystem
plots<-                 Set plots for object of EigensystemPlotParam
prefix<-                Set prefix for object of EigensystemPlotParam
project,Eigensystem-method
                        Projects the data onto one or two eigenfeatures
                        and eigenassays
report,Eigensystem,EigensystemPlotParam-method
                        Creates a report of the eigensystem
whichAssays<-           Set whichAssays for object of
                        EigensystemPlotParam
whichEigenassays<-      Set whichEigenassays for object of
                        EigensystemPlotParam
whichEigenfeatures<-    Set whichEigenfeatures for object of
                        EigensystemPlotParam
whichFeatures<-         Set whichFeatures for object of
                        EigensystemPlotParam
whichPolarAxes<-        Set whichPolarAxes for object of
                        EigensystemPlotParam
