MEAL-package	MEAL
AnalysisRegionResults	AnalysisRegionResults-class
analysisRegionResults	AnalysisRegionResults-class
AnalysisRegionResults-class	AnalysisRegionResults-class
AnalysisRegionResults-methods	AnalysisRegionResults-class
AnalysisResults	AnalysisResults-class
analysisResults	AnalysisResults-class
AnalysisResults-class	AnalysisResults-class
AnalysisResults-methods	AnalysisResults-class
blocks	AnalysisResults-class
blocks,AnalysisResults-method	AnalysisResults-class
bumps	AnalysisResults-class
bumps,AnalysisResults-method	AnalysisResults-class
calculateRelevantSNPs	calculateRelevantSNPs
computeRDAR2	computeRDAR2
correlationMethExprs	correlationMethExprs
correlationMethSNPs	correlationMethSNPs
covariableNames	AnalysisResults-class
covariableNames,AnalysisResults-method	AnalysisResults-class
createRanges	createRanges
DAPipeline	DAPipeline
DAProbe	DAProbe
DARegion	DARegion
DARegionAnalysis	DARegionAnalysis
dmrCate	AnalysisResults-class
dmrCate,AnalysisResults-method	AnalysisResults-class
explainedVariance	explainedVariance
exportResults	exportResults-methods
exportResults,AnalysisResults-method	AnalysisResults-class
feats	AnalysisResults-class
feats,AnalysisResults-method	AnalysisResults-class
featvals	AnalysisResults-class
featvals,AnalysisResults-method	AnalysisResults-class
filterSet	filterSet-methods
getGeneVals	getGeneVals-methods
getGeneVals,AnalysisResults-method	AnalysisResults-class
getMs,AnalysisResults-method	AnalysisResults-class
getRange	AnalysisRegionResults-class
getRange,AnalysisRegionResults-method	AnalysisRegionResults-class
getRDA	AnalysisRegionResults-class
getRDA,AnalysisRegionResults-method	AnalysisRegionResults-class
globalPval	AnalysisRegionResults-class
globalPval,AnalysisRegionResults-method	AnalysisRegionResults-class
globalR2	AnalysisRegionResults-class
globalR2,AnalysisRegionResults-method	AnalysisRegionResults-class
MEAL	MEAL
MEAL-defunct	MEAL-defunct
model	AnalysisResults-class
model,AnalysisResults-method	AnalysisResults-class
modelVariables	AnalysisResults-class
modelVariables,AnalysisResults-method	AnalysisResults-class
normalSNP	normalSNP
pData,AnalysisResults-method	AnalysisResults-class
pData<-,AnalysisResults,ANY-method	AnalysisResults-class
phenoData,AnalysisResults-method	AnalysisResults-class
phenoData<-,AnalysisResults,ANY-method	AnalysisResults-class
plotBestFeatures	plotBestFeatures
plotEWAS	plotEWAS-methods
plotEWAS,AnalysisResults-method	AnalysisResults-class
plotFeature	plotFeature
plotLM	plotLM
plotQQ	plotQQ-methods
plotQQ,AnalysisResults-method	AnalysisResults-class
plotRDA	plotRDA-methods
plotRDA,AnalysisRegionResults-method	AnalysisRegionResults-class
plotRegion	plotRegion-methods
plotRegion,AnalysisResults-method	AnalysisResults-class
plotRegionR2	plotRegionR2-methods
plotVolcano	plotVolcano-methods
plotVolcano,AnalysisResults-method	AnalysisResults-class
prepareMethylationSet	prepareMethylationSet
preparePhenotype	preparePhenotype
probeResults	AnalysisResults-class
probeResults,AnalysisResults-method	AnalysisResults-class
RDAPval	AnalysisRegionResults-class
RDAPval,AnalysisRegionResults-method	AnalysisRegionResults-class
RDAset	RDAset
regionR2	AnalysisRegionResults-class
regionR2,AnalysisRegionResults-method	AnalysisRegionResults-class
regionResults	AnalysisResults-class
regionResults,AnalysisResults-method	AnalysisResults-class
sampleNames,AnalysisResults-method	AnalysisResults-class
topRDAhits	topRDAhits-methods
topRDAhits,AnalysisRegionResults-method	AnalysisRegionResults-class
variableNames	AnalysisResults-class
variableNames,AnalysisResults-method	AnalysisResults-class
