BLOSUM62                BLOSUM62 matrix
LowMACA-class           Class '"LowMACA"'
LowMACA-package         LowMACA : Low frequency Mutations Analysis via
                        Consensus Alignment
LowMACA_AML             Example of a LowMACA object
alignSequences          Align sequences via clustalo
allPfamAnalysis         Global analysis of a repository of mutations
bpAll                   Draw a mutation barplot
entropy                 Calculate LowMACA statistics
getMutations            Retrieve mutation data for a LowMACA object
lfm                     Show significant clusters of mutations
lfmSingleSequence       Show significant clusters of mutations of every
                        gene in a LowMACA object without alignment
lmAlignment             Show Alignment Results from a LowMACA object
lmEntropy               Show Entropy Information Contained in a LowMACA
                        object
lmMutations             Show Mutation Data Contained in a LowMACA
                        object
lmObj                   Example of a LowMACA object
lmParams                Show and set parameters
lmPlot                  Draw a comprehensive LowMACA plot
lmPlotSingleSequence    Draw a LowMACA comprehensive plot of a
                        specified gene within a LowMACA object
mapMutations            Map mutations on consensus sequence
newLowMACA              Construct a LowMACA object
nullProfile             Draw a mutational profile plot
parallelize             Show and set parallelization options
protter                 Draw a Protter plot
setup                   Setup of a LowMACA object
showTumorType           List of tumor types
