G                       Ancestral allele frequencies from a snmf run
LEA-package             LEA: an R package for Landscape and Ecological
                        Associations studies.
Q                       Admixture coefficients from a snmf run
adjusted.pvalues        adjusted p-values from a lfmm run
ancestrymap             'ancestrymap' format description
ancestrymap2geno        Convert from 'ancestrymap' to 'geno' format
ancestrymap2lfmm        Convert from 'ancestrymap' to 'lfmm' format
create.dataset          create a data set with masked data
cross.entropy           Cross-entropy criterion from snmf runs
cross.entropy.estimation
                        compute the cross-entropy criterion
env                     Environmental input file format for 'lfmm'
geno                    Input file for 'snmf'
geno2lfmm               Convert from 'geno' to 'lfmm' format
lfmm                    Fitting Latent Factor Mixed Models
lfmm.data               Input file for 'lfmm'
lfmm2geno               Convert from 'lfmm' to 'geno' format
mlog10p.values          -log10(p-values) from a lfmm run
p.values                p-values from a lfmm run
pca                     Principal Component Analysis
ped                     'ped' format description
ped2geno                Convert from 'ped' to 'geno' format
ped2lfmm                Convert from 'ped' to 'lfmm' format
read.env                Read environmental file in the 'env'format
read.geno               read a file in the 'geno' format
read.lfmm               Read files in the 'lfmm' format
read.zscore             Read the output files of 'lfmm'
snmf                    Estimates individual ancestry coefficients and
                        ancestral allele frequencies.
tracy.widom             Tracy-Widom test for eigenvalues
tutorial                Example tutorial data sets
vcf                     'vcf' format description
vcf2geno                Convert from 'vcf' to 'geno' format
vcf2lfmm                Convert from 'vcf' to 'lfmm' format
write.env               Write files in the 'env' format
write.geno              Write files in the 'geno' format
write.lfmm              Write files in the 'lfmm' format
z.scores                z-scores from a lfmm run
zscore.format           Output file format for 'lfmm'
