EGSEA-package	EGSEA-package
$,EGSEAResults-method	EGSEAResults-methods
$,GSCollectionIndex-method	GSCollectionIndex-methods
buildCustomIdx	buildCustomIdx
buildGeneSetDBIdx	buildGeneSetDBIdx
buildIdx	buildIdx
buildKEGGIdx	buildKEGGIdx
buildMSigDBIdx	buildMSigDBIdx
EGSEA	EGSEA-package
egsea	egsea
egsea.base	egsea.base
egsea.cnt	egsea.cnt
egsea.combine	egsea.combine
egsea.logo	EGSEA-package
egsea.ora	egsea.ora
egsea.sort	egsea.sort
EGSEAResults	EGSEAResults-methods
EGSEAResults-class	EGSEAResults-methods
generateReport	EGSEAResults-methods
generateReport,EGSEAResults-method	EGSEAResults-methods
getlimmaResults	EGSEAResults-methods
getlimmaResults,EGSEAResults-method	EGSEAResults-methods
getSetByID	GSCollectionIndex-methods
getSetByID,GSCollectionIndex-method	GSCollectionIndex-methods
getSetByName	GSCollectionIndex-methods
getSetByName,GSCollectionIndex-method	GSCollectionIndex-methods
getSetScores	EGSEAResults-methods
getSetScores,EGSEAResults-method	EGSEAResults-methods
GSCollectionIndex	GSCollectionIndex-methods
GSCollectionIndex-class	GSCollectionIndex-methods
limmaTopTable	EGSEAResults-methods
limmaTopTable,EGSEAResults-method	EGSEAResults-methods
plotBars	EGSEAResults-methods
plotBars,EGSEAResults-method	EGSEAResults-methods
plotGOGraph	EGSEAResults-methods
plotGOGraph,EGSEAResults-method	EGSEAResults-methods
plotHeatmap	EGSEAResults-methods
plotHeatmap,EGSEAResults-method	EGSEAResults-methods
plotMethods	EGSEAResults-methods
plotMethods,EGSEAResults-method	EGSEAResults-methods
plotPathway	EGSEAResults-methods
plotPathway,EGSEAResults-method	EGSEAResults-methods
plotSummary	EGSEAResults-methods
plotSummary,EGSEAResults-method	EGSEAResults-methods
plotSummaryHeatmap	EGSEAResults-methods
plotSummaryHeatmap,EGSEAResults-method	EGSEAResults-methods
show,EGSEAResults-method	EGSEAResults-methods
show,GSCollectionIndex-method	GSCollectionIndex-methods
showSetByID	EGSEAResults-methods
showSetByID,EGSEAResults-method	EGSEAResults-methods
showSetByName	EGSEAResults-methods
showSetByName,EGSEAResults-method	EGSEAResults-methods
summary,EGSEAResults-method	EGSEAResults-methods
summary,GSCollectionIndex-method	GSCollectionIndex-methods
topSets	EGSEAResults-methods
topSets,EGSEAResults-method	EGSEAResults-methods
