ASN                     ASN alphabet
Alphabet                built alphabet
DNA                     DNA alphabet
RNA                     RNA alphabet
createDiffLogoObject    DiffLogo object
diffLogo                Draw DiffLogo
diffLogoFromPwm         Draw DiffLogo from PWM
diffLogoTable           Draw DiffLogo-table
differenceOfICs         normalized information content differences
getPwmFromAlignment     Create PWM from alignment
informationContent      information content
lossOfAbsICDifferences
                        the change of information content
normalizedDifferenceOfProbabilities
                        normalized probability differences
probabilities           probabilities
seqLogo                 Draw sequence logo
shannonDivergence       shannon divergence
sumOfAbsICDifferences   sum of absolute information content differences
sumOfAbsProbabilityDifferences
                        sum of absolute probability differences
sumProbabilities        sum of probabilities, i.e. 1.0
