5cadad9363f9dacbe53c1870f520ed8e *DESCRIPTION
c9d5154d40d11229ede090875735e90f *INDEX
bb087882b665fe8e24160a58aedd00ce *LICENSE
2143ffec5627c4e607808c714c138345 *Meta/Rd.rds
77daf962d65b9858f48adf3f60275bc0 *Meta/data.rds
f85f8a9855ed9ce73530e5baf774a339 *Meta/features.rds
c00026747405d7a752986b1d03613818 *Meta/hsearch.rds
0b3c63842291140021e128adeb484ec1 *Meta/links.rds
5396a088f632c1ffb4e7ffca2972d42c *Meta/nsInfo.rds
333266ab662a018c9b2e89adb2fc164d *Meta/package.rds
3020dcfafb36bbde05bb51db21a8f09e *Meta/vignette.rds
f70d624902b5dd8bbac3cf4944401d38 *NAMESPACE
ecb76a5811661ba7a362b145f02bf20b *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/CNEr
68f9b545495f019d55d88993b3c12184 *R/CNEr.rdb
cad82356045ccb6239f0ad70552c8214 *R/CNEr.rdx
a595fc03c3b3d57f048c4e21a18c7cd2 *data/CNEDanRer10Hg38.rda
85fca72fe185084dbb12393bbb56c94d *data/CNEHg38DanRer10.rda
d7aff5e8ce701e2ce81feb5ba8434b73 *data/axisTrack.rda
05e4a1691e623dbc5d5132c625c3e952 *data/cneFinalListDanRer10Hg38.rda
3e2c63d5839dce07a3f8a017924633e6 *data/cpgIslands.rda
f636989efeff6b5effb53b546919718f *data/grangesPairsForDotplot.rda
fb9424ea5abd0f82ef1105e8462b8a1a *data/refGenes.rda
01341e6d5da03d20135905255c1758bc *doc/CNEr.R
2de5bf342921f97286a553613e6aa05b *doc/CNEr.Rmd
65b6848654368c0a3ef3340f542c1ecd *doc/CNEr.html
64e8dc244827ea0981cce1a9d7e04488 *doc/PairwiseWholeGenomeAlignment.R
757ca2f473ff91bd78bd8cef0d315e38 *doc/PairwiseWholeGenomeAlignment.Rmd
b873cc69ed8641c5a603a26d8a194a73 *doc/PairwiseWholeGenomeAlignment.html
5fe54fa153d8ed86ace9301a0b2b7d82 *doc/index.html
e1225e2387a670279ab8e2f5695a5b62 *extdata/chr4.hg19.galGal3.net.axt.gz
9c8c4347211a68e2d2bdca8b3eb2a995 *extdata/cne2wBf_AstMex102_danRer10_48_50
144c4e621b5903d66fce90d40ff3452a *extdata/cne2wBf_cteIde1_danRer10_100_100
703b7fae3bd724a255a201e07f0f19ff *extdata/cne2wBf_cypCar1_danRer10_100_100
aad28bc8c6f7865a28ec3b4c06aa7517 *extdata/cne2wBf_danRer10_hg38_45_50
ee3f3bafa1ea2dd69057da90d4df026a *extdata/danRer10.hg38.net.axt
f0c8e5aa59cfa775c42fa54300a7e108 *extdata/danRer10CNE.sqlite
32f9e6948d016e9935633c6f1c34ed43 *extdata/filter_regions.danRer10.bed
8f357f770b042ed678b4f2b38e687053 *extdata/filter_regions.hg38.bed
83a080592fbc9a9e1e3c8045874bc4b6 *extdata/hg38.danRer10.net.axt
109773cc892befc7f16e64051a2f3180 *extdata/rmsk.fa
3154742ebd13239bbf4eeba5a7775707 *help/AnIndex
db8fc2af00bfe96853d982e02dbd5981 *help/CNEr.rdb
3661fc241bc081ce9fdd8d03cd44eeec *help/CNEr.rdx
1cb9f314d3804daf99f531a41e1c949e *help/aliases.rds
d27db2b09a158438dbb88838de7aaa5f *help/paths.rds
28de02b0609548a763f4391e5f34bf33 *html/00Index.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
8855003525a9c62fa0a6f3c88e64cb46 *libs/i386/CNEr.dll
d5c9bd3b41a9e085b3d3d424e62279a4 *libs/x64/CNEr.dll
ec85324af0f35f446e7f94ec7477fd3c *obsolete/CNEr.Rnw
3b502ef13330de1cd98dc4288a6f43d1 *obsolete/ceScan.r
d14cd8fb9911e5da6a2ba93af6d5974a *obsolete/ceScanR.r
0b52e0839eedfa011db6788f30472403 *obsolete/class.r
cdd26c6f3a003ce2e80db8921c7a7857 *obsolete/src/ceScan.c
b9b504316a8eeb190646972e165f979f *obsolete/src/ceScanBranch1.c
ed4391ac6a30aa3da32d63d7cbf5b17a *obsolete/src/ceScanBranch2.c
0a1fe70559c587a9104001f5203af75d *obsolete/src/compile
9e3c821c3f64ccfe466aa466d5f82ec5 *scripts/danRer10Pipeline.R
5f67d785a452ecc6f8168088a7b8b0c9 *scripts/prepareData.R
