4711d690a1142240ebb306b2707c7247 *DESCRIPTION
7df4bb7ed3567bc49c716a367bda43cc *INDEX
f587359c7838b5407df51654a765df74 *Meta/Rd.rds
e774c54c32a92a2cca7db01eca995e8d *Meta/data.rds
f85f8a9855ed9ce73530e5baf774a339 *Meta/features.rds
d0c84a9e2dc85ca22739bbb975e29055 *Meta/hsearch.rds
707696a2f2668cb925d38c0166e1d963 *Meta/links.rds
e56c0762b1543bb74e0ab742dbe35049 *Meta/nsInfo.rds
1cac1948178386b40d4115e61c156bb6 *Meta/package.rds
1134280a766758ce997f0f7efa8321d8 *Meta/vignette.rds
7d0c6f671c370481acde07efa08441db *NAMESPACE
3a5fbb3686117c9533c9649b898fb26c *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/Biostrings
8382efd3708b15ae9d382df90565e2c0 *R/Biostrings.rdb
bee145cba0411ff0a46895e7f0927657 *R/Biostrings.rdx
fb21544885b0d8e223dc707a19f703a6 *data/BLOSUM100.rda
370ae409745a34652b50f6c0992a7c36 *data/BLOSUM45.rda
ff21fdf7ae6c26d41265485e06678c47 *data/BLOSUM50.rda
938f1640bbcee65ce83726127c8efa8f *data/BLOSUM62.rda
ec70a69370ee7b924a1521bd22a0b92a *data/BLOSUM80.rda
4bb649b15a1c70fdc6beb4ea37ca8d58 *data/HNF4alpha.rda
b85025df056de88ad4e0ec260b4fbd3e *data/PAM120.rda
d790bbcef52f77bdbac03ca4fe317a0d *data/PAM250.rda
5ab6a6fb04f2bb2011c96abdea970b87 *data/PAM30.rda
d234baa0914f6233478aa0687fdbe10c *data/PAM40.rda
8533b9535b841e231b9babd78d584885 *data/PAM70.rda
d1f902614de1a9eba90d8387690c2688 *data/phiX174Phage.rda
ea5bd4d16695006aab9061c351649bb6 *data/srPhiX174.rda
e566417a897993c19e4b81e517778b6c *data/yeastSEQCHR1.rda
3efc1f8f1ed38992daa06eebf7089093 *doc/Biostrings2Classes.R
d7f69eedb9db937ef0b727cd1d558b8d *doc/Biostrings2Classes.Rnw
87567a6762a220fb6f06741f76099b42 *doc/Biostrings2Classes.pdf
8502d37f86dc4764fd55a1675f339fcd *doc/BiostringsQuickOverview.Rnw
7c38943685a9a3446e4125cfdfbae450 *doc/BiostringsQuickOverview.pdf
ace2aaa19a8c155063245051e600608b *doc/MultipleAlignments.R
61f53dbee2860c3e5cd6924d8e158129 *doc/MultipleAlignments.Rnw
a22493df222804bdd9952c5a3bf1e25e *doc/MultipleAlignments.pdf
d5ead973798874d96822c55b86b48d89 *doc/PairwiseAlignments.R
8bedd825a4ccb05be73053f55ee63acc *doc/PairwiseAlignments.Rnw
c8f23976e077c6051d8e7633d78a7966 *doc/PairwiseAlignments.pdf
c464dac6b998f0d563b32be23d69e3e4 *doc/index.html
2a20cd27e459126e737ef5d753ebddbe *doc/matchprobes.R
b239f15493ac1bc5ab95d1afd25a2b28 *doc/matchprobes.Rnw
55628fd0422ba84e28b2969c8e424219 *doc/matchprobes.pdf
78e8db3ebcbc095287e6fd8ccfe0e1a2 *extdata/Phylip.txt
fce14be25eab8521b6ee474b4c36a7df *extdata/README
24604bc9ec4790d5d590a623edea5548 *extdata/Sc.fa
1a6fe1b8caec191eb16265cc5b1d7563 *extdata/Sp.fa
11861abec072717c887a753e28f05f56 *extdata/dm3_upstream2000.fa.gz
cfea9d61b851d60768c0751e17ab9937 *extdata/fastaEx.fa
c4114941da5b3499beff7b3f87c84166 *extdata/hg18chr8_gap.txt
76897b4820e1ed23b787a171ae4d3b5a *extdata/hg18chrY_gap.txt
3f5e79e34a204b72bb52b2e5d2b79f19 *extdata/msx2_mRNA.aln
23770dfd9eb85ab715b4cc28268bbc42 *extdata/s_1_sequence.txt
6210f3d073b676bc7bed60172a72c3e3 *extdata/someORF.fa
2fc0b8e9625d6ebebf8fca9cb7737ebd *extdata/someORF.fa.gz
3283265e0bdc0cfc2c96bdbb33af0a78 *help/AnIndex
a404907f3aed52930cca7a9aeb792aaf *help/Biostrings.rdb
9bcbd2bc7d3b4ad148f45f36839958ab *help/Biostrings.rdx
3db2125994bf2c39c2b5a03623702745 *help/aliases.rds
301a82bd5a7b22a04aa0a23d2c359144 *help/paths.rds
2e0df2375bb8e0a9ce03be31f49619d6 *html/00Index.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
608047e5166d641a8ecb4f4f02d2294b *include/Biostrings_defines.h
fec43c1846f3bba85aa803354f52ef74 *include/Biostrings_interface.h
e27db4c0e66fa6c49509cadf03b3616e *include/_Biostrings_stubs.c
7a33b8ea48e0fb7b72b5102ee62f8575 *libs/i386/Biostrings.dll
2ef008e89b050ee5bcec2a90d90f6a70 *libs/x64/Biostrings.dll
16f044e2cdb85f2d44f501610554df57 *unitTests/test_MultipleAlignment.R
1437c2c15ae9d298a46c40bdc46455f9 *unitTests/test_XString.R
a96552f0e445683eda61fc9ec1ecead4 *unitTests/test_XStringSet.R
46c6cf375691dccb047582d39ca71bef *unitTests/test_XStringSetList.R
c6fed7d62d87e8fd0fd23f978a072ba9 *unitTests/test_findPalindromes.R
5a4fe6582d86f20f68c627d1efd511c0 *unitTests/test_matchDNAPattern.R.FIXME
0371bd65424b6b0160dd18f537333cc0 *unitTests/test_matchPDict.R
81024370010e243c14bd882b4cb9a727 *unitTests/test_pairwiseAlignment.R
407a2929d7f9fce74bd30e731a492477 *unitTests/test_twoWayAlphabetFrequency.R
