Package: xcms
Version: 1.50.1
Date: 2016-12-20
Title: LC/MS and GC/MS Data Analysis
Author: Colin A. Smith <csmith@scripps.edu>,
    Ralf Tautenhahn <rtautenh@gmail.com>,
    Steffen Neumann <sneumann@ipb-halle.de>,
    Paul Benton <hpbenton@scripps.edu>,
    Christopher Conley <cjconley@ucdavis.edu>,
    Johannes Rainer <Johannes.Rainer@eurac.edu>
Maintainer: Steffen Neumann <sneumann@ipb-halle.de>
Depends: R (>= 2.14.0), methods, mzR (>= 1.1.6), BiocGenerics,
        ProtGenerics, Biobase
Imports: lattice, RColorBrewer, plyr, RANN, multtest, MassSpecWavelet
        (>= 1.5.2), BiocParallel, S4Vectors
Suggests: BiocStyle, knitr (>= 1.1.0), faahKO, msdata, ncdf4, rgl,
        RUnit
Enhances: Rgraphviz, Rmpi, XML
Description: Framework for processing and visualization of chromatographically
    separated and single-spectra mass spectral data. Imports from AIA/ANDI NetCDF,
    mzXML, mzData and mzML files. Preprocesses data for high-throughput, untargeted
    analyte profiling.
License: GPL (>= 2) + file LICENSE
URL: http://metlin.scripps.edu/download/ and
        https://github.com/sneumann/xcms
VignetteBuilder: knitr
BugReports: https://github.com/sneumann/xcms/issues/new
biocViews: MassSpectrometry, Metabolomics
RoxygenNote: 5.0.1
Collate: 'AllGenerics.R' 'DataClasses.R' 'Deprecated.R' 'MPI.R' 'c.R'
        'cwTools.R' 'databases.R' 'functions-binning.R'
        'do_detectFeatures-functions.R' 'fastMatch.R'
        'functions-utils.R' 'functions-xcmsEIC.R'
        'functions-xcmsFragments.R' 'functions-xcmsRaw.R'
        'functions-xcmsSet.R' 'init.R' 'matchpeaks.R' 'methods-IO.R'
        'methods-netCdfSource.R' 'methods-rampSource.R'
        'methods-xcmsEIC.R' 'methods-xcmsFragments.R'
        'methods-xcmsPeaks.R' 'methods-xcmsRaw.R' 'methods-xcmsSet.R'
        'models.R' 'msn2xcmsRaw.R' 'mzClust.R' 'netCDF.R' 'plotQC.R'
        'ramp.R' 'specDist.R' 'write.mzquantML.R' 'writemzdata.R'
        'writemztab.R' 'xcmsSource.R' 'zzz.R'
NeedsCompilation: yes
Packaged: 2016-12-21 23:43:32 UTC; biocbuild
Built: R 3.3.2; i386-w64-mingw32; 2016-12-22 06:24:05 UTC; windows
Archs: i386, x64
