RUNIT TEST PROTOCOL -- Thu Dec 22 01:42:33 2016 
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Number of test functions: 72 
Number of errors: 0 
Number of failures: 0 

 
1 Test Suite : 
xcms unit testing - 72 test functions, 0 errors, 0 failures



Details 
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Test Suite: xcms unit testing 
Test function regexp: ^test.+ 
Test file regexp: ^runit.+\.[rR]$ 
Involved directory: 
C:/Users/biocbuild/bbs-3.4-bioc/meat/xcms.buildbin-libdir/xcms/unitTests 
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Test file: C:/Users/biocbuild/bbs-3.4-bioc/meat/xcms.buildbin-libdir/xcms/unitTests/runit.BiocParallel.R 
test_BiocParallel: (1 checks) ... OK (18.58 seconds)
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Test file: C:/Users/biocbuild/bbs-3.4-bioc/meat/xcms.buildbin-libdir/xcms/unitTests/runit.absentPresent.R 
testPresentAbsentSum: (8 checks) ... OK (1.44 seconds)
testPresentAbsentSumAfterFillPeaks: (8 checks) ... OK (7.92 seconds)
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Test file: C:/Users/biocbuild/bbs-3.4-bioc/meat/xcms.buildbin-libdir/xcms/unitTests/runit.diffreport.R 
testAnova: (0 checks) ... OK (8.51 seconds)
testDiffreport: (0 checks) ... OK (7.54 seconds)
testDiffreportMinSamples: (0 checks) ... OK (9.04 seconds)
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Test file: C:/Users/biocbuild/bbs-3.4-bioc/meat/xcms.buildbin-libdir/xcms/unitTests/runit.fillPeaks.R 
test.fillPeaksColumns: (2 checks) ... OK (20.14 seconds)
testFillPeaksPar: (1 checks) ... OK (14.17 seconds)
testFilledFlag: (1 checks) ... OK (7.61 seconds)
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Test file: C:/Users/biocbuild/bbs-3.4-bioc/meat/xcms.buildbin-libdir/xcms/unitTests/runit.findPeaksCentWave.R 
test.findPeaksCentWaveResort: (1 checks) ... OK (34.93 seconds)
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Test file: C:/Users/biocbuild/bbs-3.4-bioc/meat/xcms.buildbin-libdir/xcms/unitTests/runit.findPeaksCentWave.fitGauss.plot.R 
test.findPeaksCentWave: (0 checks) ... OK (72.31 seconds)
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Test file: C:/Users/biocbuild/bbs-3.4-bioc/meat/xcms.buildbin-libdir/xcms/unitTests/runit.findPeaksCentWaveWithIsotopeROIs.R 
test.addPredictedIsotopeFeatures: (1 checks) ... OK (27.41 seconds)
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Test file: C:/Users/biocbuild/bbs-3.4-bioc/meat/xcms.buildbin-libdir/xcms/unitTests/runit.findPeaksMassIfQuant.R 
test.findPeaksMassIfQuant: (0 checks) ... OK (1.89 seconds)
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Test file: C:/Users/biocbuild/bbs-3.4-bioc/meat/xcms.buildbin-libdir/xcms/unitTests/runit.getEIC.R 
test.getEICretcor: (0 checks) ... OK (9.5 seconds)
test.getEICxraw: (5 checks) ... OK (11.16 seconds)
test.getEICxset: (0 checks) ... OK (7.78 seconds)
test.issue7: (5 checks) ... OK (35.89 seconds)
test.plotEIC: (0 checks) ... OK (0.03 seconds)
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Test file: C:/Users/biocbuild/bbs-3.4-bioc/meat/xcms.buildbin-libdir/xcms/unitTests/runit.getXcmsRaw.R 
test.getXcmsRaw: (6 checks) ... OK (22.86 seconds)
test.getXcmsRawIssue44: (3 checks) ... OK (1.43 seconds)
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Test file: C:/Users/biocbuild/bbs-3.4-bioc/meat/xcms.buildbin-libdir/xcms/unitTests/runit.group.R 
testGroupDensityOnePeak: (0 checks) ... OK (0 seconds)
testGroupNearest: (1 checks) ... OK (10.46 seconds)
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Test file: C:/Users/biocbuild/bbs-3.4-bioc/meat/xcms.buildbin-libdir/xcms/unitTests/runit.msms.R 
test.msn2xcmsRaw: (3 checks) ... OK (1.47 seconds)
test.xcmsRawms1: (0 checks) ... OK (0.08 seconds)
test.xcmsRawms123: (4 checks) ... OK (0.2 seconds)
test.xcmsSetms2cw: (0 checks) ... OK (0.39 seconds)
test.xcmsSetms2mf: (0 checks) ... OK (0.34 seconds)
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Test file: C:/Users/biocbuild/bbs-3.4-bioc/meat/xcms.buildbin-libdir/xcms/unitTests/runit.obiwarp.R 
test.obiwarp.cor: (0 checks) ... OK (10.9 seconds)
test.obiwarp.cor_opt: (0 checks) ... OK (4.11 seconds)
test.obiwarp.cov: (0 checks) ... OK (10.71 seconds)
test.obiwarp.default: (0 checks) ... OK (4.11 seconds)
test.obiwarp.euc: (0 checks) ... OK (10.81 seconds)
test.obiwarp.local: (0 checks) ... OK (4.09 seconds)
test.obiwarp.prd: (0 checks) ... OK (10.73 seconds)
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Test file: C:/Users/biocbuild/bbs-3.4-bioc/meat/xcms.buildbin-libdir/xcms/unitTests/runit.phenoData.R 
testMultiFactor: (0 checks) ... OK (1.01 seconds)
testMultiFactorDiffreport: (0 checks) ... OK (7.36 seconds)
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Test file: C:/Users/biocbuild/bbs-3.4-bioc/meat/xcms.buildbin-libdir/xcms/unitTests/runit.rawMat.R 
test.rawMat: (1 checks) ... OK (0.03 seconds)
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Test file: C:/Users/biocbuild/bbs-3.4-bioc/meat/xcms.buildbin-libdir/xcms/unitTests/runit.sampclass.R 
test.sampclass: (5 checks) ... OK (4.23 seconds)
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Test file: C:/Users/biocbuild/bbs-3.4-bioc/meat/xcms.buildbin-libdir/xcms/unitTests/runit.scanrage.R 
test.xcmsRawScanrange.100: (1 checks) ... OK (0.04 seconds)
test.xcmsRawScanrange.first: (1 checks) ... OK (0.06 seconds)
test.xcmsRawScanrange.last: (1 checks) ... OK (0.06 seconds)
test.xcmsRawScanrange.none: (1 checks) ... OK (0.03 seconds)
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Test file: C:/Users/biocbuild/bbs-3.4-bioc/meat/xcms.buildbin-libdir/xcms/unitTests/runit.snames.R 
testAssignClass: (0 checks) ... OK (1.6 seconds)
testAssignNames: (0 checks) ... OK (1.54 seconds)
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Test file: C:/Users/biocbuild/bbs-3.4-bioc/meat/xcms.buildbin-libdir/xcms/unitTests/runit.specDist.R 
test.specDist: (3 checks) ... OK (0.03 seconds)
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Test file: C:/Users/biocbuild/bbs-3.4-bioc/meat/xcms.buildbin-libdir/xcms/unitTests/runit.splitCombine.R 
testCombine: (1 checks) ... OK (0.01 seconds)
testSplit: (1 checks) ... OK (0.02 seconds)
testSplitAll: (1 checks) ... OK (0.02 seconds)
testSplitFactorLongDrop: (6 checks) ... OK (0 seconds)
testSplitFactorShort: (6 checks) ... OK (0.02 seconds)
testSplitFirst: (1 checks) ... OK (0 seconds)
testSplitLast: (1 checks) ... OK (0 seconds)
testSplitMiddle: (1 checks) ... OK (0.02 seconds)
testSplitNone: (1 checks) ... OK (0 seconds)
testSplitPhenoData: (7 checks) ... OK (0.02 seconds)
testSubset: (66 checks) ... OK (2.4 seconds)
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Test file: C:/Users/biocbuild/bbs-3.4-bioc/meat/xcms.buildbin-libdir/xcms/unitTests/runit.splitRaw.R 
testSplitRawEven: (3 checks) ... OK (0.05 seconds)
testSplitRawFirst: (1 checks) ... OK (0.05 seconds)
testSplitRawLast: (1 checks) ... OK (0.23 seconds)
testSplitRawNone: (3 checks) ... OK (0.06 seconds)
testSplitRawOdd: (3 checks) ... OK (0.07 seconds)
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Test file: C:/Users/biocbuild/bbs-3.4-bioc/meat/xcms.buildbin-libdir/xcms/unitTests/runit.unusedGroups.R 
testGroup: (1 checks) ... OK (1.02 seconds)
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Test file: C:/Users/biocbuild/bbs-3.4-bioc/meat/xcms.buildbin-libdir/xcms/unitTests/runit.writecdf.R 
test.write.cdf: (2 checks) ... OK (0.29 seconds)
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Test file: C:/Users/biocbuild/bbs-3.4-bioc/meat/xcms.buildbin-libdir/xcms/unitTests/runit.writemzdata.R 
test.write.mzdata: (2 checks) ... OK (1.81 seconds)
test.writeMS2.mzdata: (2 checks) ... OK (3.53 seconds)
test.writeMSn.mzdata: (2 checks) ... OK (0.09 seconds)
test.writePolarity.mzdata: (1 checks) ... OK (0.56 seconds)
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Test file: C:/Users/biocbuild/bbs-3.4-bioc/meat/xcms.buildbin-libdir/xcms/unitTests/runit.writemzquantml.R 
test.write.mzQuantML: (1 checks) ... OK (5 seconds)
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Test file: C:/Users/biocbuild/bbs-3.4-bioc/meat/xcms.buildbin-libdir/xcms/unitTests/runit.xcmsRawCopy.R 
test.rawMat: (2 checks) ... OK (0.03 seconds)
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Test file: C:/Users/biocbuild/bbs-3.4-bioc/meat/xcms.buildbin-libdir/xcms/unitTests/runit.xcmsSet.R 
test.findPeaksCentWave: (2 checks) ... OK (1.36 seconds)
test.findPeaksMatchedFilter: (2 checks) ... OK (3.08 seconds)
test.xcmsSetParallel: (1 checks) ... OK (0.7 seconds)
