BMIQ                    Beta-Mixture Quantile (BMIQ) Normalisation
                        method for Illumina 450k arrays
Beta2M                  Internal functions for peak.correction (fuks)
DataToNChannelSet2      Internal functions for readEPIC and other
                        wateRmelon functions introduced in v 1.13.1
adaptRefQuantiles       Functions from 450-pipeline (Touleimat & Tost)
agep                    Age Prediction from methylomic expression data
as.methylumi-methods    Methods for Function 'as.methylumi'
beadc                   Calculates the number of samples with bead
                        count <3 for each probe in matrix of bead count
                        values
beadcount               Creates matrix of beacounts from minfi data.
betaqn,exprmethy450-method
                        Calculate normalized betas from exprmethy450 of
                        Illumina 450K methylation arrays
bscon                   Calculate bisulphite conversion
colnames-methods        Methods for Function 'colnames' in Package
                        'wateRmelon'
combo                   Combine MethyLumiSet objects
dasen                   Calculate normalized betas from Illumina 450K
                        methylation arrays
db1                     Internal wateRmelon functions for calculating
                        betas
dmrse                   Standard error of iDMR 450k array DNA
                        methylation features
dmrse-methods           Methods for Function 'dmrse' in Package
                        'wateRmelon'
genki                   SNP derived performance metrics for Illumina
                        450K DNA methylation arrays.
genki-methods           Methods for Function 'genki' in Package
                        'wateRmelon'
genkme                  Internal functions for genotype-based
                        normalization metrics
got                     Internal functions for Illumina i450
                        normalization functions
iDMR                    Imprinting differentially methylated region
                        probes of Illumina 450 arrays
melon                   Small MethyLumi data set for examples and
                        testing
metrics                 Calculate a full set of 450K
                        normalization/performance metrics
naten,MethyLumiSet-method
                        Calculate normalized betas from MethyLumiSets
                        of Illumina 450K methylation arrays
naten,MethylSet-method
                        Calculate normalized betas from Illumina 450K
                        methylation arrays
outlyx                  Identify Outliers within Methylumi and Minfi
                        packaged objects
outlyx,MethylSet-method
                        Methods for Function 'outlyx' in Package
                        'wateRmelon'
pfilter                 Basic data filtering for Illumina 450
                        methylation data
pwod                    Probe-Wise Outlier Detection
pwod,MethylSet-method   Methods for Function 'pwod' in Package
                        'wateRmelon'
qual                    A measure of Normalization Violence
readEPIC                readEPIC
seabi                   Calculate a performance metric based on
                        male-female differences for Illumina
                        methylation 450K arrays
seabi-methods           Methods for Function 'seabi' in Package
                        'wateRmelon'
seabird                 Calculate ROC area-under-curve for X-chromosome
                        sex differences (internal function for
                        calculating the seabi metric)
sextest                 Test Illumina methylation 450K array probes for
                        sex difference (internal function for
                        calculating 'seabi' performance metric)
wateRmelon-package      Illumina 450K arrays: normalization and
                        performance metrics
