# GWAS trait-associated SNP enrichment analyses in genomic intervals

## Documentation for package ‘traseR’ version 1.4.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

traseR-package | GWAS trait-associated SNP enrichment analyses in genomic intervals
CEU | Sampled SNPs from all SNPs of CEU population in 1000 genome project
plotContext | Visualize of trait-associated SNPs
plotGene | Visualize of trait-associated SNPs
plotInterval | Visualize of trait-associated SNPs
plotPvalue | Visualize of trait-associated SNPs
plotSNP | Visualize of trait-associated SNPs
print.traseR | Print the outcome of taSNP enrichment analyses
queryGene | Retrieve trait-associated SNPs based
queryKeyword | Retrieve trait-associated SNPs based
querySNP | Retrieve trait-associated SNPs based
taSNP | trait-associated SNPs in dbGaP and NHGRI downloaded from Association Results Browser
taSNPLD | linkage disequilibrium (>0.8) within 100kb SNPs of all trait-associated SNPs from dbGaP and NHGRI
Tcell | Peak regions of H3K4me1 in Peripheral blood T cell
traseR | TRait-Associated SNP EnRichment analyses