Package: tofsims
Type: Package
Title: Import, process and analysis of Time-of-Flight Secondary Ion
        Mass Spectrometry (ToF-SIMS) imaging data
Version: 1.2.0
Author: Lorenz Gerber, Viet Mai Hoang
Maintainer: Lorenz Gerber <genfys@gmail.com>
Depends: R (>= 3.3.0), methods, utils, ProtGenerics
Description: This packages offers a pipeline for import, processing and analysis of ToF-SIMS
          2D image data. Import of Iontof and Ulvac-Phi raw or preprocessed data is
          supported. For rawdata, mass calibration, peak picking and peak integration exist.
          General funcionality includes data binning, scaling, image subsetting and
          visualization. A range of multivariate tools common in the ToF-SIMS community are
          implemented (PCA, MCR, MAF, MNF). An interface to the bioconductor image processing
          package EBImage offers image segmentation functionality.
License: GPL-3
Imports: Rcpp (>= 0.11.2), ALS, ChemometricsWithR, signal, KernSmooth,
        graphics, grDevices, stats
Suggests: EBImage, knitr, rmarkdown, testthat, tofsimsData,
        BiocParallel, RColorBrewer
Enhances: parallel
LinkingTo: Rcpp, RcppArmadillo
VignetteBuilder: knitr
biocViews: Infrastructure, DataImport, MassSpectrometry,
        ImagingMassSpectrometry, Proteomics, Metabolomics
RoxygenNote: 5.0.1
NeedsCompilation: yes
Packaged: 2016-10-18 00:28:39 UTC; biocbuild
Built: R 3.3.1; i386-w64-mingw32; 2016-10-18 05:05:10 UTC; windows
Archs: i386, x64
