citHeader("To cite the sigaR package in publications use:")

citEntry(entry="Manual",
    title = "sigaR: statistics for integrative genomics analyses in R",
    author = personList(as.person("W.N. van Wieringen")),
    year = substring(packageDescription("sigaR")$Date,1,4),
    note = paste("R package version", packageDescription("sigaR")$Version),
    textVersion =
      paste("Wessel N. van Wieringen (",
        substring(packageDescription("sigaR")$Date,1,4),
        ") sigaR: statistics for integrative genomics analyses in R. ",
        "R package, version ", packageDescription("sigaR")$Version,
        ".", sep = "")
)

citEntry(entry="Article",
    title = "Non-parametric testing for DNA copy number induced differential mRNA gene expression",
    author = personList(as.person("W.N. van Wieringen"),
        as.person("M.A. van de wiel")),
    journal = "Biometrics",
    volume = 65,
    number = 1,
    pages = "19-29",
    year = 2009,
    textVersion =
      paste("Van Wieringen, W.N., Van de Wiel, M.A. (2009),",
		"Non-parametric testing for DNA copy number induced differential mRNA gene expression.", 
        	"Biometrics, 65(1), 19-29.")
)
 
citEntry(entry="Article",
    title = "A random coefficients model for regional co-expression associated with DNA copy number",
    author = personList(as.person("W.N. van Wieringen"),
        as.person("J. Berkhof"),
        as.person("M.A. van de Wiel")),
    journal = "Statistical Applications in Genetics and Molecular Biology",
    volume = 9,
    number = 1,
    pages = "Article 25",
    year = 2010,
    textVersion =
      paste("Van Wieringen, W.N., Berkhof, J., Van de Wiel, M.A. (2010),",
        "A random coefficients model for regional co-expression associated with DNA copy number.",
        "Statistical Applications in Genetics and Molecular Biology, 9(1), Article 25.")
)


citEntry(entry="Article",
    title = "Statistical analysis of the cancer cell's molecular entropy using high-throughput data",
    author = personList(as.person("W.N. van Wieringen"),
        as.person("A.W. van der Vaart")),
    journal = "Bioinformatics",
    volume = 27,
    number = 4,
    pages = "556-563",
    year = 2011,
    textVersion =
      paste("Van Wieringen, W.N., Van der Vaart, A.W. (2011),",
		"Statistical analysis of the cancer cell's molecular entropy using high-throughput data.", 
        	"Bioinformatics, 27(4), 556-563.")
)


citEntry(entry="Article",
    title = "Matching of array CGH and gene expression microarray features for the purpose of integrative analysis",
    author = personList(as.person("W.N. van Wieringen"),
        as.person("K. Unger"),
        as.person("G.G.R. Leday"),
        as.person("O. Krijgsman"),
        as.person("R.X. de Menezes"),
        as.person("B. Ylstra"),
        as.person("M.A. van de Wiel")),
    journal = "BMC Bioinformatics",
    year = 2012,
    textVersion =
      paste("Van Wieringen, W.N., Unger, K., Leday, G.G.R., Krijgsman, O., De Menezes, R.X., Ylstra, B., Van de Wiel, M.A. (2012),",
		"Matching of array CGH and gene expression microarray features for the purpose of integrative analysis.", 
        	"BMC Bioinformatics, 13:80.")
)



citEntry(entry="Article",
    title = "Modeling the cis- and trans-effect of DNA copy number aberrations on gene expression levels in a pathway",
    author = personList(as.person("W.N. van Wieringen"),
        as.person("M.A. van de Wiel")),
    journal = "submitted",
    year = 2012,
    textVersion =
      paste("Van Wieringen, W.N., Van de Wiel, M.A. (2012),",
		"Modeling the cis- and trans-effect of DNA copy number aberrations on gene expression levels in a pathway.", 
        	"submitted.")
)
