sigaR-package	sigaR-package
.RCMloss-method	z.RCMloss-method
cghCall2cghSeg	cghCall2cghSeg
cghCall2maximumSubset	cghCall2maximumSubset
cghCall2order	cghCall2order
cghCall2subset	cghCall2subset
cghCall2weightedSubset	cghCall2weightedSubset
cghSeg2order	cghSeg2order
cghSeg2subset	cghSeg2subset
cghSeg2weightedSubset	cghSeg2weightedSubset
cisEffectPlot	cisEffectPlot
cisEffectTable	cisEffectTable
cisEffectTest	cisEffectTest
cisEffectTune	cisEffectTune
cisTest-class	cisTest-class
CNGEheatmaps	CNGEheatmaps
entropyTest	entropyTest
entTest-class	entTest-class
expandMatching2singleIDs	expandMatching2singleIDs
ExpressionSet2order	ExpressionSet2order
ExpressionSet2subset	ExpressionSet2subset
ExpressionSet2weightedSubset	ExpressionSet2weightedSubset
getSegFeatures	getSegFeatures
hdEntropy	hdEntropy
hdMI	hdMI
matchAnn2Ann	matchAnn2Ann
matchCGHcall2ExpressionSet	matchCGHcall2ExpressionSet
merge2cghCalls	merge2cghCalls
merge2ExpressionSets	merge2ExpressionSets
miTest-class	miTest-class
mutInfTest	mutInfTest
nBreakpoints	nBreakpoints
pathway1sample	pathway1sample
pathway2sample	pathway2sample
pathwayFit-class	pathwayFit-class
pathwayPlot	pathwayPlot
pollackCN16	pollackCN16
pollackGE16	pollackGE16
profilesPlot	profilesPlot
RCMestimation	RCMestimation
rcmFit-class	rcmFit-class
RCMrandom	RCMrandom
RCMrandom,rcmFit-method	RCMrandom-method
RCMrandom-method	RCMrandom-method
RCMtest	RCMtest
rcmTest-class	rcmTest-class
sigaR	sigaR-package
splitMatchingAtBreakpoints	splitMatchingAtBreakpoints
summary,ANY-method	summary-method
summary,entTest-method	summary-method
summary,miTest-method	summary-method
summary,rcmFit-method	summary-method
summary,rcmTest-method	summary-method
summary-method	summary-method
uniqGenomicInfo	uniqGenomicInfo
