# Generated by roxygen2: do not edit by hand

S3method("[",WideSomaLogicData)
S3method(as.ExpressionSet,WideSomaLogicData)
S3method(as.MSnSet,WideSomaLogicData)
S3method(as.SummarizedExperiment,WideSomaLogicData)
S3method(getIntensities,LongSomaLogicData)
S3method(getIntensities,WideSomaLogicData)
S3method(getSampleData,LongSomaLogicData)
S3method(getSampleData,WideSomaLogicData)
S3method(getSequencesWithLargestBetweenGroupVariation,LongSomaLogicData)
S3method(melt,WideSomaLogicData)
export(WideSomaLogicData)
export(as.ExpressionSet)
export(as.MSnSet)
export(as.SummarizedExperiment)
export(colnamesStartWithSeqId)
export(convertSeqIdToAptamer)
export(createSampleSubmission)
export(extractSampleData)
export(getChecksum)
export(getChromosomalPositions)
export(getEnsemblIds)
export(getGoBiologicalProcesses)
export(getGoCellularComponents)
export(getGoMolecularFunctions)
export(getIntensities)
export(getKeggDefinitions)
export(getKeggModules)
export(getKeggPathways)
export(getMetadata)
export(getPfam)
export(getSampleData)
export(getSequenceData)
export(getSequencesWithLargestBetweenGroupVariation)
export(getUniProtKeywords)
export(readAdat)
export(readComments)
export(readControls)
export(readSamples)
export(readSlides)
export(setChecksum)
export(setIntensities)
export(setMetadata)
export(setSampleData)
export(setSequenceData)
export(soma2eset)
export(writeSampleSubmissionForm)
importFrom(Biobase,"exprs<-")
importFrom(Biobase,ExpressionSet)
importFrom(Biobase,exprs)
importFrom(Biobase,fData)
importFrom(Biobase,pData)
importFrom(SummarizedExperiment,SummarizedExperiment)
importFrom(assertive.base,are_identical)
importFrom(assertive.base,assert_all_are_not_false)
importFrom(assertive.base,assert_are_identical)
importFrom(assertive.base,assert_engine)
importFrom(assertive.base,call_and_name)
importFrom(assertive.base,get_name_in_parent)
importFrom(assertive.base,set_cause)
importFrom(assertive.files,assert_all_are_existing_files)
importFrom(assertive.files,is_connection)
importFrom(assertive.numbers,assert_all_are_less_than_or_equal_to)
importFrom(assertive.properties,assert_is_not_null)
importFrom(assertive.properties,is_empty)
importFrom(assertive.properties,is_scalar)
importFrom(assertive.sets,assert_is_subset)
importFrom(assertive.types,assert_is_a_string)
importFrom(assertive.types,assert_is_character)
importFrom(assertive.types,assert_is_data.frame)
importFrom(assertive.types,assert_is_inherited_from)
importFrom(assertive.types,assert_is_list)
importFrom(data.table,":=")
importFrom(data.table,as.data.table)
importFrom(data.table,copy)
importFrom(data.table,data.table)
importFrom(data.table,fread)
importFrom(data.table,is.data.table)
importFrom(data.table,melt.data.table)
importFrom(data.table,setattr)
importFrom(data.table,setkeyv)
importFrom(data.table,setnames)
importFrom(dplyr,"%>%")
importFrom(dplyr,arrange_)
importFrom(dplyr,as.tbl)
importFrom(dplyr,bind_cols)
importFrom(dplyr,bind_rows)
importFrom(dplyr,desc)
importFrom(dplyr,filter_)
importFrom(dplyr,group_by_)
importFrom(dplyr,inner_join)
importFrom(dplyr,left_join)
importFrom(dplyr,select_)
importFrom(dplyr,summarize_)
importFrom(magrittr,"%$%")
importFrom(magrittr,"%<>%")
importFrom(magrittr,"%>%")
importFrom(magrittr,extract)
importFrom(openxlsx,write.xlsx)
importFrom(pathological,create_dirs)
importFrom(reshape2,melt)
importFrom(stats,setNames)
importFrom(stringi,stri_detect_regex)
importFrom(stringi,stri_read_lines)
importFrom(stringi,stri_replace_all_regex)
importFrom(stringi,stri_replace_first_regex)
importFrom(stringi,stri_split_fixed)
importFrom(stringi,stri_sub)
importFrom(stringi,stri_trim_both)
importFrom(testthat,evaluate_promise)
importFrom(tidyr,separate)
importFrom(utils,data)
importFrom(utils,head)
importFrom(utils,unzip)
