Package: pwOmics
Type: Package
Title: Pathway-based data integration of omics data
Version: 1.6.0
Date: 2014-12-29
Author: Astrid Wachter <Astrid.Wachter@med.uni-goettingen.de>
Maintainer: Astrid Wachter <Astrid.Wachter@med.uni-goettingen.de>
Description: pwOmics performs pathway-based level-specific data
    comparison of matching omics data sets based on pre-analysed
    user-specified lists of differential genes/transcripts and
    proteins. A separate downstream analysis of proteomic data
    including pathway identification and enrichment analysis,
    transcription factor identification and target gene
    identification is opposed to the upstream analysis starting
    with gene or transcript information as basis for identification
    of upstream transcription factors and regulators. The
    cross-platform comparative analysis allows for comprehensive
    analysis of single time point experiments and time-series
    experiments by providing static and dynamic analysis tools for
    data integration.
License: GPL (>= 2)
Depends: R (>= 3.2)
Imports: data.table, rBiopaxParser, igraph, STRINGdb, graphics, gplots,
        Biobase, BiocGenerics, AnnotationDbi, biomaRt, AnnotationHub,
        GenomicRanges
Suggests: ebdbNet, longitudinal, Mfuzz
biocViews: SystemsBiology, Transcription, GeneTarget
NeedsCompilation: no
RoxygenNote: 5.0.1
Packaged: 2016-10-18 00:19:05 UTC; biocbuild
Built: R 3.3.1; ; 2016-10-18 04:12:55 UTC; windows
